BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0563100 Os04g0563100|J023140D18
(104 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G38360.2 | chr4:17967389-17969798 FORWARD LENGTH=486 150 1e-37
AT1G77220.1 | chr1:29013232-29015530 FORWARD LENGTH=485 127 8e-31
AT1G23070.1 | chr1:8174011-8175758 REVERSE LENGTH=404 100 2e-22
AT1G11200.1 | chr1:3753896-3755459 FORWARD LENGTH=296 71 1e-13
AT4G21570.1 | chr4:11471126-11472269 REVERSE LENGTH=295 67 2e-12
AT5G26740.1 | chr5:9292436-9294407 FORWARD LENGTH=423 64 2e-11
AT3G05940.1 | chr3:1777592-1779648 REVERSE LENGTH=423 64 2e-11
>AT4G38360.2 | chr4:17967389-17969798 FORWARD LENGTH=486
Length = 485
Score = 150 bits (380), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 69/92 (75%), Positives = 82/92 (89%)
Query: 1 CRYPYFAAVLNFSQYWALYCLVEWYTATKDELAHIKPLAKFLSFKSIVFLTWWQGVVIAI 60
C YPY A VLNFSQ WALYCLV++Y ATKDELAHI+PLAKFL+FKSIVFLTWWQGV IA+
Sbjct: 196 CGYPYLAVVLNFSQSWALYCLVQFYGATKDELAHIQPLAKFLTFKSIVFLTWWQGVAIAL 255
Query: 61 MYSLGLLRSPLAQSLELKSSIQDFIICIEVLV 92
+ SLGL +S +AQSL+LK+S+QDFIICIE+ +
Sbjct: 256 LSSLGLFKSSIAQSLQLKTSVQDFIICIEMGI 287
>AT1G77220.1 | chr1:29013232-29015530 FORWARD LENGTH=485
Length = 484
Score = 127 bits (320), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 59/88 (67%), Positives = 75/88 (85%), Gaps = 2/88 (2%)
Query: 3 YPYFAAVLNFSQYWALYCLVEWYTATKDELAHIKPLAKFLSFKSIVFLTWWQGVVIAIMY 62
YPY A VLNFSQ WALYCLV++Y KD+LA IKPLAKFL+FKSIVFLTWWQG+++A ++
Sbjct: 220 YPYLAVVLNFSQTWALYCLVQFYNVIKDKLAPIKPLAKFLTFKSIVFLTWWQGIIVAFLF 279
Query: 63 SLGLLRSPLAQSLELKSSIQDFIICIEV 90
S+GL++ LA+ ELK+ IQD+IICIE+
Sbjct: 280 SMGLVKGSLAK--ELKTRIQDYIICIEM 305
>AT1G23070.1 | chr1:8174011-8175758 REVERSE LENGTH=404
Length = 403
Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 63/90 (70%), Gaps = 4/90 (4%)
Query: 3 YPYFAAVLNFSQYWALYCLVEWYTATKDELAHIKPLAKFLSFKSIVFLTWWQGVVIAIMY 62
YPY VLNFSQ WAL+CLV++Y T + L IKPLAKF+SFK+IVF TWWQG IA++
Sbjct: 192 YPYIVVVLNFSQMWALFCLVQFYNVTHERLKEIKPLAKFISFKAIVFATWWQGFGIALLC 251
Query: 63 SLGLLRSPLAQSLELKSSIQDFIICIEVLV 92
G+ L + ++ +QDF+ICIE+ +
Sbjct: 252 YYGI----LPKEGRFQNGLQDFLICIEMAI 277
>AT1G11200.1 | chr1:3753896-3755459 FORWARD LENGTH=296
Length = 295
Score = 70.9 bits (172), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Query: 6 FAAVLNFSQYWALYCLVEWYTATKDELAHIKPLAKFLSFKSIVFLTWWQGVVIAIMYSLG 65
F A+LN S ALY LV++Y EL KPL KF+ K IVF +WQG+V+ I+ LG
Sbjct: 179 FTAILNVSVSLALYSLVKFYHVFAKELEPHKPLTKFMCVKGIVFFCFWQGIVLKILVGLG 238
Query: 66 LLRSPL--AQSLELKSSIQDFIICIEVLVF 93
L++S + +L+ ++Q+ ++C+E++VF
Sbjct: 239 LIKSHHFWLEVDQLEEALQNVLVCLEMIVF 268
>AT4G21570.1 | chr4:11471126-11472269 REVERSE LENGTH=295
Length = 294
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 6 FAAVLNFSQYWALYCLVEWYTATKDELAHIKPLAKFLSFKSIVFLTWWQGVVIAIMYSLG 65
F ++NFS ALY LV +Y ELA PLAKFL K IVF +WQG+ + I+ ++G
Sbjct: 179 FTIIVNFSVSLALYSLVIFYHVFAKELAPHNPLAKFLCIKGIVFFVFWQGIALDILVAMG 238
Query: 66 LLRSPL--AQSLELKSSIQDFIICIEVLVF 93
++S + +++ +IQ+ ++C+E+++F
Sbjct: 239 FIKSHHFWLEVEQIQEAIQNVLVCLEMVIF 268
>AT5G26740.1 | chr5:9292436-9294407 FORWARD LENGTH=423
Length = 422
Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 3 YPYFAAVLNFSQYWALYCLVEWYTATKDELAHIKPLAKFLSFKSIVFLTWWQGVVIAIMY 62
Y Y + S ALY LV +Y A +D L P+ KF+ KS+VFLT+WQGV++ +
Sbjct: 171 YLYLTIIYTISYTVALYALVLFYMACRDLLQPFNPVPKFVIIKSVVFLTYWQGVLVFLAA 230
Query: 63 SLGLLRSPLAQSLELKSSIQDFIICIEVLV 92
G ++ S E + Q+FIIC+E+L+
Sbjct: 231 KSGFIK-----SAEAAAHFQNFIICVEMLI 255
>AT3G05940.1 | chr3:1777592-1779648 REVERSE LENGTH=423
Length = 422
Score = 63.5 bits (153), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 3 YPYFAAVLNFSQYWALYCLVEWYTATKDELAHIKPLAKFLSFKSIVFLTWWQGVVIAIMY 62
Y Y + S ALY LV +Y A KD L P+ KF+ KS+VFLT+WQGV++ +
Sbjct: 171 YLYLTIIYTISYTVALYALVLFYVACKDLLQPFNPVPKFVIIKSVVFLTYWQGVLVFLFA 230
Query: 63 SLGLLRSPLAQSLELKSSIQDFIICIEVLV 92
G +R +L Q+FIIC+E+L+
Sbjct: 231 KSGFIRDEEEAAL-----FQNFIICVEMLI 255
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.331 0.141 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,067,979
Number of extensions: 68430
Number of successful extensions: 205
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 7
Length of query: 104
Length of database: 11,106,569
Length adjustment: 74
Effective length of query: 30
Effective length of database: 9,077,785
Effective search space: 272333550
Effective search space used: 272333550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 104 (44.7 bits)