BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0410700 Os07g0410700|AK062612
(239 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0410700 Similar to Ethylene-responsive element binding... 337 5e-93
Os07g0410300 Pathogenesis-related transcriptional factor an... 135 2e-32
Os09g0572000 Pathogenesis-related transcriptional factor an... 106 1e-23
Os03g0860100 Similar to Ethylene-responsive transcription f... 96 3e-20
Os09g0571700 67 8e-12
Os02g0654700 Similar to Ethylene-responsive transcription f... 67 1e-11
Os04g0257500 Similar to Transcription factor TSRF1 67 1e-11
>Os07g0410700 Similar to Ethylene-responsive element binding protein 1
Length = 239
Score = 337 bits (864), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 179/239 (74%), Positives = 179/239 (74%)
Query: 1 MAEHFSHAGMYIGYTADAAAXXXXXXXXXXXXXXEMLRFDTGWPDETPAPSSVAGRRRSA 60
MAEHFSHAGMYIGYTADAAA EMLRFDTGWPDETPAPSSVAGRRRSA
Sbjct: 1 MAEHFSHAGMYIGYTADAAASSSSSSSSSSSSSSEMLRFDTGWPDETPAPSSVAGRRRSA 60
Query: 61 GGDHRQGRGQTEAAAAFIGVRRRPWGRFAAEIRDSTRNGARVWIGTFDSXXXXXXXXXXX 120
GGDHRQGRGQTEAAAAFIGVRRRPWGRFAAEIRDSTRNGARVWIGTFDS
Sbjct: 61 GGDHRQGRGQTEAAAAFIGVRRRPWGRFAAEIRDSTRNGARVWIGTFDSAEAAAMAYDQA 120
Query: 121 XXXXXXXXXXLNFPVERVRESLHALSLGAAGGSPVLALXXXXXXXXXXXXAELLXXXXXX 180
LNFPVERVRESLHALSLGAAGGSPVLAL AELL
Sbjct: 121 ALSARGAAAALNFPVERVRESLHALSLGAAGGSPVLALKRRHSKRKRRKKAELLAAAAAT 180
Query: 181 XXXXXXXPQTRRISKSTELTTATTDEQKRFVVELEDLGAEYLEELLWLSEINGGSDPAD 239
PQTRRISKSTELTTATTDEQKRFVVELEDLGAEYLEELLWLSEINGGSDPAD
Sbjct: 181 AATANATPQTRRISKSTELTTATTDEQKRFVVELEDLGAEYLEELLWLSEINGGSDPAD 239
>Os07g0410300 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 212
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 92/158 (58%), Gaps = 12/158 (7%)
Query: 73 AAAAFIGVRRRPWGRFAAEIRDSTRNGARVWIGTFDSXXXXXXXXXXXXXXXXXXXXXLN 132
AAA FIGVR+RPWGRFAAEIRDSTRNG RVW+GTF++ LN
Sbjct: 63 AAAGFIGVRKRPWGRFAAEIRDSTRNGVRVWLGTFETAEAAAMAYDQAALSARGAAAALN 122
Query: 133 FPVERVRESLHALSLGAAGGSPVLALXXXXXXXXXXXXAELLXXXXXXXXXXXXXPQTRR 192
FPVERVRESL AL+LGAAGGSPVLAL +EL
Sbjct: 123 FPVERVRESLRALALGAAGGSPVLALKGRHSKRKRRKRSEL------------AGATATA 170
Query: 193 ISKSTELTTATTDEQKRFVVELEDLGAEYLEELLWLSE 230
+T + T E K+ V+ELEDLGA+YLEELLW+SE
Sbjct: 171 NKTTTTTSATTGGEHKQIVLELEDLGADYLEELLWMSE 208
>Os09g0572000 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 238
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 75/145 (51%), Gaps = 25/145 (17%)
Query: 77 FIGVRRRPWGRFAAEIRDSTRNGARVWIGTFDSXXXXXXXXXXXXXXXXXXXXXLNFPVE 136
IGVR+RPWG+FAAEIRDSTR GARVW+GTFDS LNFP+
Sbjct: 87 LIGVRKRPWGKFAAEIRDSTRKGARVWLGTFDSPEAAAMAYDQAAFSVRGASAVLNFPLH 146
Query: 137 RVRESLHALSLGAAGGSPVLALXXXXXXXXXXXXAELLXXXXXXXXXXXXXPQTRRISKS 196
RV+ESL AL+LGAAGGSPVLAL + R+ +K
Sbjct: 147 RVQESLQALALGAAGGSPVLALKRRHSIR-----------------------KRRKPTKH 183
Query: 197 TELTTATTDEQKRFVVELEDLGAEY 221
L E VVELEDLGA+Y
Sbjct: 184 MLLMQQQQQEPT--VVELEDLGADY 206
>Os03g0860100 Similar to Ethylene-responsive transcription factor 2
(Ethylene-responsive element binding factor 2) (EREBP-2)
(AtERF2)
Length = 225
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 75/161 (46%), Gaps = 23/161 (14%)
Query: 70 QTEAAAAFIGVRRRPWGRFAAEIRDSTRNGARVWIGTFDSXXXXXXXXXXXXXXXXXXXX 129
Q + AF GVR+RPWG+FAAEIRDSTRNG RVW+GTFDS
Sbjct: 73 QVQQQQAFRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFDSAEEAALAYDQAAFAMRGSAA 132
Query: 130 XLNFPVERVRESLHALSLGAAGGSPVLALXXXXXXXXXXXXAELLXXXXXXXXXXXXXPQ 189
LNFP+E+VR S+ +SL G SPV+AL
Sbjct: 133 VLNFPMEQVRRSMD-MSLLQEGASPVVALKRRHSMRA----------------------A 169
Query: 190 TRRISKSTELTTATTDEQKRFVVELEDLGAEYLEELLWLSE 230
+ + E V+ELEDLG +YLEELL S+
Sbjct: 170 AAGRRRKSAAPAPADQEGGGGVMELEDLGPDYLEELLAASQ 210
>Os09g0571700
Length = 131
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 38/65 (58%)
Query: 72 EAAAAFIGVRRRPWGRFAAEIRDSTRNGARVWIGTFDSXXXXXXXXXXXXXXXXXXXXXL 131
E A + GVRRRPWG+FAAEIRDS+R+G RVW+GTFD+ L
Sbjct: 13 ELVAKYRGVRRRPWGKFAAEIRDSSRHGVRVWLGTFDTAEEAARAYDRSAYSMRGANAVL 72
Query: 132 NFPVE 136
NFP +
Sbjct: 73 NFPAD 77
>Os02g0654700 Similar to Ethylene-responsive transcription factor 5
(Ethylene-responsive element binding factor 5) (EREBP-5)
(AtERF5)
Length = 303
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 65 RQGRGQTEAAAA----FIGVRRRPWGRFAAEIRDSTRNGARVWIGTFDSXXXXXXXXXXX 120
R+G G+ A A+ + GVR+RPWG+FAAEIRD +NGARVW+GTFDS
Sbjct: 133 REGEGEAVAVASRGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFDSAEEAAVAYDRA 192
Query: 121 XXXXXXXXXXLNFPV 135
LNFP+
Sbjct: 193 AYRMRGSRALLNFPL 207
>Os04g0257500 Similar to Transcription factor TSRF1
Length = 128
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 38/65 (58%)
Query: 70 QTEAAAAFIGVRRRPWGRFAAEIRDSTRNGARVWIGTFDSXXXXXXXXXXXXXXXXXXXX 129
+ EAA+ + GVRRRPWG+FAAEIRD R G+RVW+GTFD+
Sbjct: 5 KKEAASKYRGVRRRPWGKFAAEIRDPERGGSRVWLGTFDTAEEAARAYDRAAFAMKGAMA 64
Query: 130 XLNFP 134
LNFP
Sbjct: 65 VLNFP 69
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,841,673
Number of extensions: 240306
Number of successful extensions: 1397
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 1435
Number of HSP's successfully gapped: 10
Length of query: 239
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 141
Effective length of database: 11,918,829
Effective search space: 1680554889
Effective search space used: 1680554889
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)