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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0410300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.39 (0.0685) R2 : 0.351
β1 : 2.43 (0.252) R2dD : 0.142 R2D : 0.0723
β2 : 2.38 (0.213) R2dC : 0.284 R2C : -0.016
β3 : -2.14 (0.205) R2dE : 0.249 R2E : -0.108
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.91 (0.152) R2dN8 : 0.0862 R2N8 : -0.0229
σ : 1.27
deviance : 739.37
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_____
C
peak time of C : 19.2
E
wheather : temperature
threshold : 25.72
memory length : 37
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 12.4
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
738.69 1.28 5.33 2.76 2.54 -2.27 -0.585 1.7 1.12 19.4 25.75 44 12.6 --
739.46 1.28 5.39 2.43 2.37 -2.12 -0.246 -- 0.909 19.2 25.8 42 12.5 --
737.21 1.27 5.37 2.6 2.37 -2.16 -- 1.11 0.956 19.2 25.7 40 12.5 --
739.37 1.27 5.39 2.43 2.38 -2.14 -- -- 0.91 19.2 25.72 37 12.4 --
914.93 1.42 5.34 2.47 -- -1.27 -- 1.2 0.807 -- 26.28 8 16.1 --
872.99 1.39 5.46 2.03 1.6 -- -0.603 -- 0.515 22.2 -- -- -- --
874.44 1.38 5.46 2.06 1.6 -- -- -- 0.516 22.2 -- -- -- --
900.02 1.4 5.35 2.25 -- -1.36 -- -- 0.813 -- 25.18 8 18.5 --
888.84 1.4 5.46 -- 2.26 -1.82 -- -- 0.574 19.8 25.72 34 11.5 --
1029.46 1.5 5.41 2.08 -- -- -- -- 0.519 -- -- -- -- --
986.01 1.47 5.51 -- 1.61 -- -- -- 0.287 22.2 -- -- -- --
986.01 1.46 5.47 -- -- -1.61 -- -- 0.287 -- 6.293 31 20 --
1143.55 1.58 5.46 -- -- -- -- -- 0.288 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 756.11 temperature 25 720 > th dose dependent rect. 20 19
6 758.02 temperature 25 720 > th dose dependent rect. 9 6
15 759.28 temperature 25 720 > th dose dependent rect. 2 13
23 759.67 temperature 25 270 > th dose dependent rect. 13 23
24 759.79 temperature 25 30 > th dose dependent sin 17 NA
25 760.13 temperature 25 720 > th dose dependent sin 3 NA
35 760.37 temperature 25 270 > th dose dependent rect. 7 17
44 760.68 temperature 25 90 > th dose dependent rect. 8 20
74 761.50 temperature 25 270 > th dose dependent rect. 2 22
95 761.90 temperature 25 270 > th dose dependent no NA NA
148 763.31 temperature 25 270 > th dose dependent rect. 15 23
191 765.11 temperature 25 30 > th dose independent sin 19 NA
454 770.01 temperature 25 30 < th dose independent sin 19 NA
468 770.53 temperature 30 43200 > th dose dependent rect. 15 1
499 771.28 temperature 30 43200 > th dose independent rect. 11 1
503 771.35 temperature 30 43200 < th dose independent rect. 10 2
575 771.56 temperature 30 43200 < th dose independent rect. 10 4
585 771.63 temperature 30 43200 > th dose dependent sin 18 NA
690 771.91 temperature 30 43200 > th dose dependent no NA NA
793 772.05 temperature 30 43200 < th dose independent rect. 7 7
796 772.05 temperature 30 43200 < th dose independent rect. 3 11
799 772.05 temperature 30 43200 < th dose independent rect. 22 16
800 772.05 temperature 30 43200 < th dose independent rect. 20 18
880 772.31 temperature 30 43200 < th dose independent rect. 16 22
905 772.53 temperature 30 43200 < th dose independent sin 6 NA
907 772.54 temperature 30 43200 > th dose independent rect. 16 22
908 772.54 temperature 25 43200 > th dose dependent rect. 7 2
957 772.74 temperature 30 43200 < th dose independent rect. 13 1
968 772.80 temperature 30 43200 > th dose independent sin 5 NA
975 772.84 temperature 30 43200 < th dose independent rect. 16 2
996 772.90 temperature 30 43200 > th dose independent rect. 16 2