BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0410300 Os07g0410300|AK108503
(212 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0410300 Pathogenesis-related transcriptional factor an... 162 2e-40
Os07g0410700 Similar to Ethylene-responsive element binding... 99 3e-21
Os03g0860100 Similar to Ethylene-responsive transcription f... 90 1e-18
Os09g0572000 Pathogenesis-related transcriptional factor an... 80 8e-16
Os09g0571700 68 6e-12
>Os07g0410300 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 212
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 99/212 (46%), Positives = 99/212 (46%)
Query: 1 VKHSQLTESHTWSNXXXXXXXXXXWLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
VKHSQLTESHTWSN WLS
Sbjct: 1 VKHSQLTESHTWSNTATAGTTAAAWLSPQPPVPARRRRHPRNRSRLATTTRRRGAPRCRR 60
Query: 61 XXXXXGFIGVRKRPWGRFAAEIRDSTRNGVRVWLGTFETXXXXXXXXXXXXXXXXXXXXX 120
GFIGVRKRPWGRFAAEIRDSTRNGVRVWLGTFET
Sbjct: 61 PAAAAGFIGVRKRPWGRFAAEIRDSTRNGVRVWLGTFETAEAAAMAYDQAALSARGAAAA 120
Query: 121 LNFPVERVRESXXXXXXXXXXXXXXXXXKGRHSXXXXXXXSELXXXXXXXXXXXXXXXXX 180
LNFPVERVRES KGRHS SEL
Sbjct: 121 LNFPVERVRESLRALALGAAGGSPVLALKGRHSKRKRRKRSELAGATATANKTTTTTSAT 180
Query: 181 XXXEHKQIVLELEDLGADYLEELLWMSEQTSH 212
EHKQIVLELEDLGADYLEELLWMSEQTSH
Sbjct: 181 TGGEHKQIVLELEDLGADYLEELLWMSEQTSH 212
>Os07g0410700 Similar to Ethylene-responsive element binding protein 1
Length = 239
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 73/154 (47%), Gaps = 12/154 (7%)
Query: 67 FIGVRKRPWGRFAAEIRDSTRNGVRVWLGTFETXXXXXXXXXXXXXXXXXXXXXLNFPVE 126
FIGVR+RPWGRFAAEIRDSTRNG RVW+GTF++ LNFPVE
Sbjct: 77 FIGVRRRPWGRFAAEIRDSTRNGARVWIGTFDSAEAAAMAYDQAALSARGAAAALNFPVE 136
Query: 127 RVRESXXXXXXXXXXXXXXXXXKGRHSXXXXXXXSEL------------XXXXXXXXXXX 174
RVRES K RHS +EL
Sbjct: 137 RVRESLHALSLGAAGGSPVLALKRRHSKRKRRKKAELLAAAAATAATANATPQTRRISKS 196
Query: 175 XXXXXXXXXEHKQIVLELEDLGADYLEELLWMSE 208
E K+ V+ELEDLGA+YLEELLW+SE
Sbjct: 197 TELTTATTDEQKRFVVELEDLGAEYLEELLWLSE 230
>Os03g0860100 Similar to Ethylene-responsive transcription factor 2
(Ethylene-responsive element binding factor 2) (EREBP-2)
(AtERF2)
Length = 225
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 64/142 (45%), Gaps = 11/142 (7%)
Query: 67 FIGVRKRPWGRFAAEIRDSTRNGVRVWLGTFETXXXXXXXXXXXXXXXXXXXXXLNFPVE 126
F GVRKRPWG+FAAEIRDSTRNGVRVWLGTF++ LNFP+E
Sbjct: 80 FRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFDSAEEAALAYDQAAFAMRGSAAVLNFPME 139
Query: 127 RVRESXXXXXXXXXXXXXXXXXKGRHSXXXXXXXSELXXXXXXXXXXXXXXXXXXXXEHK 186
+VR S K RHS E
Sbjct: 140 QVRRS-MDMSLLQEGASPVVALKRRHSMRAAAAGRR----------RKSAAPAPADQEGG 188
Query: 187 QIVLELEDLGADYLEELLWMSE 208
V+ELEDLG DYLEELL S+
Sbjct: 189 GGVMELEDLGPDYLEELLAASQ 210
>Os09g0572000 Pathogenesis-related transcriptional factor and ERF domain
containing protein
Length = 238
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 67 FIGVRKRPWGRFAAEIRDSTRNGVRVWLGTFETXXXXXXXXXXXXXXXXXXXXXLNFPVE 126
IGVRKRPWG+FAAEIRDSTR G RVWLGTF++ LNFP+
Sbjct: 87 LIGVRKRPWGKFAAEIRDSTRKGARVWLGTFDSPEAAAMAYDQAAFSVRGASAVLNFPLH 146
Query: 127 RVRESXXXXXXXXXXXXXXXXXKGRHSXXXXXXXSELXXXXXXXXXXXXXXXXXXXXEHK 186
RV+ES K RHS ++ + +
Sbjct: 147 RVQESLQALALGAAGGSPVLALKRRHSIRKRRKPTK-------------HMLLMQQQQQE 193
Query: 187 QIVLELEDLGADY 199
V+ELEDLGADY
Sbjct: 194 PTVVELEDLGADY 206
>Os09g0571700
Length = 131
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 37/60 (61%)
Query: 67 FIGVRKRPWGRFAAEIRDSTRNGVRVWLGTFETXXXXXXXXXXXXXXXXXXXXXLNFPVE 126
+ GVR+RPWG+FAAEIRDS+R+GVRVWLGTF+T LNFP +
Sbjct: 18 YRGVRRRPWGKFAAEIRDSSRHGVRVWLGTFDTAEEAARAYDRSAYSMRGANAVLNFPAD 77
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,101,105
Number of extensions: 49888
Number of successful extensions: 306
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 343
Number of HSP's successfully gapped: 5
Length of query: 212
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 115
Effective length of database: 11,971,043
Effective search space: 1376669945
Effective search space used: 1376669945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)