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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0572000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.26 (0.0514) R2 : 0.214
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.62 (0.153) R2dE : 0.195 R2E : 0.198
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.286 (0.108) R2dN8 : 0.0155 R2N8 : 0.0188
σ : 0.966
deviance : 429.98
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C
peak time of C : --
E
wheather : humidity
threshold : 68.2
memory length : 715
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.2
open length of G : 0.865

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
423.87 0.967 3.25 0.018 0.029 1.54 -1.62 1.32 0.296 4.27 67.81 722 19.1 0.966
426.36 0.962 3.25 0.103 0.0341 1.57 -1.22 -- 0.3 6.24 68.2 719 19.1 0.952
429.05 0.965 3.26 0.0513 0.0319 1.57 -- 0.512 0.282 2.2 68 719 19 0.95
429.79 0.966 3.25 0.0813 0.0106 1.62 -- -- 0.291 3.96 68 719 19.1 0.951
429.03 0.965 3.25 0.0688 -- 1.59 -- 0.481 0.292 -- 67.87 719 19 0.991
485.34 1.03 3.25 0.185 0.89 -- 0.267 -- 0.374 0.915 -- -- -- --
485.61 1.03 3.25 0.175 0.891 -- -- -- 0.372 1.01 -- -- -- --
429.78 0.966 3.25 0.0874 -- 1.62 -- -- 0.295 -- 68 720 19.1 0.95
429.98 0.966 3.26 -- 0.00758 1.61 -- -- 0.289 23.8 68 720 19.1 0.95
534.93 1.08 3.23 0.208 -- -- -- -- 0.389 -- -- -- -- --
486.42 1.03 3.25 -- 0.893 -- -- -- 0.353 1.02 -- -- -- --
429.98 0.966 3.26 -- -- 1.62 -- -- 0.286 -- 68.2 715 19.2 0.865
536.07 1.08 3.24 -- -- -- -- -- 0.366 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 424.86 humidity 70 720 > th dose dependent rect. 19 1
3 429.81 humidity 80 720 > th dose independent rect. 19 1
6 432.55 humidity 60 720 > th dose dependent rect. 16 4
8 432.79 radiation 1 720 < th dose independent rect. 14 13
9 432.85 radiation 1 720 < th dose dependent rect. 14 13
13 433.88 humidity 70 720 > th dose independent rect. 16 4
15 434.10 radiation 1 720 < th dose dependent rect. 10 17
22 434.56 radiation 1 720 < th dose independent rect. 10 17
28 434.76 humidity 70 720 > th dose independent rect. 16 11
71 439.87 temperature 25 14400 > th dose dependent rect. 23 1
72 439.88 temperature 30 720 < th dose independent rect. 17 10
78 440.52 humidity 50 720 > th dose dependent rect. 15 12
85 440.84 temperature 30 14400 < th dose independent rect. 17 12
87 440.86 temperature 30 14400 < th dose independent rect. 17 2
89 440.87 temperature 30 14400 < th dose independent rect. 17 15
95 440.93 temperature 30 14400 > th dose independent rect. 17 2
124 441.34 radiation 1 720 < th dose independent rect. 14 5
128 441.48 humidity 70 720 > th dose independent rect. 14 17
130 441.54 humidity 70 720 > th dose independent sin 13 NA
149 441.66 temperature 30 720 < th dose independent rect. 15 5
170 441.82 humidity 80 720 < th dose dependent rect. 18 6
185 442.06 temperature 30 14400 > th dose dependent rect. 14 5
199 442.08 temperature 30 14400 > th dose dependent rect. 17 2
221 442.14 temperature 30 14400 > th dose dependent sin 12 NA
270 442.43 temperature 30 720 < th dose independent rect. 14 7
308 442.74 temperature 30 14400 < th dose independent sin 11 NA
311 442.76 temperature 30 14400 > th dose independent sin 11 NA
403 443.19 radiation 1 720 < th dose independent rect. 10 9
448 443.34 humidity 70 720 > th dose independent rect. 14 20
451 443.35 radiation 1 720 < th dose dependent rect. 14 5
475 443.43 temperature 30 14400 > th dose dependent no NA NA
610 443.53 temperature 30 14400 > th dose independent rect. 15 21
613 443.54 temperature 30 14400 < th dose independent rect. 15 21
664 443.70 humidity 70 720 < th dose independent sin 14 NA
693 443.81 radiation 1 720 < th dose dependent rect. 8 11
718 443.87 radiation 1 720 < th dose dependent rect. 10 9
758 444.04 temperature 30 720 < th dose independent rect. 17 3
766 444.06 radiation 1 720 < th dose independent rect. 7 13
781 444.13 humidity 70 720 < th dose independent rect. 14 6
816 444.28 temperature 30 14400 > th dose independent rect. 9 10
882 444.35 temperature 30 14400 > th dose independent no NA NA
1000 444.42 temperature 30 14400 < th dose independent rect. 9 10