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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0860100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ethylene-responsive transcription factor 2 (Ethylene-responsive element binding factor 2) (EREBP-2) (AtERF2).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.56 (0.0725) R2 : 0.283
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.74 (0.173) R2dC : 0.163 R2C : 0.17
β3 : 5.67 (0.671) R2dE : 0.112 R2E : 0.113
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.294 (0.153) R2dN8 : 0.00723 R2N8 : 0.000489
σ : 1.36
deviance : 851.15
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_____
C
peak time of C : 0.863
E
wheather : wind
threshold : 7.9
memory length : 268
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 3.97
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
835.97 1.36 3.59 0.764 1.72 8.15 0.0321 9.84 0.361 0.908 7.8 286 3.87 --
845.62 1.35 3.52 0.615 1.69 6.32 0.358 -- 0.408 0.78 7.697 289 4.06 --
835.14 1.35 3.59 0.763 1.73 8.34 -- 10.1 0.36 0.913 7.842 268 3.86 --
840.08 1.35 3.54 0.667 1.75 6.05 -- -- 0.379 0.893 7.9 268 3.94 --
1011.59 1.48 3.55 0.861 -- 8.82 -- 11.1 0.419 -- 7.9 326 4.49 --
981.31 1.47 3.59 0.143 1.8 -- -0.0361 -- 0.154 0.757 -- -- -- --
981.32 1.47 3.59 0.144 1.8 -- -- -- 0.155 0.757 -- -- -- --
1021.71 1.49 3.52 0.701 -- 6.18 -- -- 0.39 -- 7.8 339 4.46 --
851.15 1.36 3.56 -- 1.74 5.67 -- -- 0.294 0.863 7.9 268 3.97 --
1184.05 1.61 3.56 0.209 -- -- -- -- 0.187 -- -- -- -- --
981.87 1.47 3.6 -- 1.8 -- -- -- 0.139 0.761 -- -- -- --
1034.52 1.5 3.53 -- -- 5.86 -- -- 0.309 -- 7.821 338 4.53 --
1185.21 1.61 3.57 -- -- -- -- -- 0.164 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 848.27 wind 7 270 > th dose dependent rect. 21 13
2 848.42 wind 7 270 > th dose independent rect. 21 13
3 848.54 wind 7 270 > th dose dependent sin 10 NA
6 853.43 wind 7 270 > th dose independent rect. 21 8
9 853.63 wind 7 270 > th dose independent sin 10 NA
17 858.32 wind 7 270 < th dose independent sin 10 NA
18 858.86 wind 7 720 > th dose independent rect. 19 7
20 860.36 wind 7 720 > th dose dependent rect. 19 7
22 860.65 wind 7 720 > th dose independent rect. 21 1
24 860.84 wind 7 720 > th dose dependent rect. 21 1
28 861.79 wind 7 270 > th dose dependent rect. 21 8
36 862.48 wind 7 720 > th dose dependent rect. 21 5
60 864.81 wind 7 720 > th dose dependent rect. 19 3
122 869.22 wind 7 720 < th dose independent rect. 19 16
166 873.61 radiation 10 1440 < th dose dependent rect. 10 1
187 875.43 wind 7 720 > th dose dependent rect. 16 20
205 876.49 wind 9 1440 > th dose dependent rect. 20 21
221 877.35 radiation 10 1440 < th dose dependent rect. 9 3
228 877.58 wind 9 1440 > th dose dependent rect. 9 8
253 878.55 wind 9 1440 > th dose dependent sin 2 NA
290 879.55 wind 9 1440 > th dose independent rect. 19 21
300 879.97 wind 7 270 > th dose independent rect. 23 2
305 880.07 wind 7 720 > th dose independent rect. 17 19
309 880.11 wind 9 1440 > th dose dependent rect. 16 23
336 880.55 wind 7 720 > th dose independent rect. 15 21
346 880.85 wind 9 1440 < th dose independent rect. 19 22
355 881.06 wind 9 1440 > th dose independent sin 3 NA
361 881.17 wind 9 1440 < th dose independent rect. 5 12
365 881.23 wind 9 1440 > th dose dependent rect. 9 13
413 881.50 wind 9 1440 > th dose independent rect. 9 8
430 881.57 wind 9 1440 > th dose dependent no NA NA
520 881.83 wind 9 1440 < th dose independent rect. 24 17
522 881.84 wind 9 1440 < th dose independent sin 2 NA
587 883.14 radiation 10 1440 < th dose independent rect. 9 20
593 883.24 radiation 10 1440 < th dose independent rect. 9 15
595 883.25 radiation 10 1440 < th dose independent rect. 9 10
618 883.74 radiation 10 1440 < th dose independent rect. 9 22
678 884.67 wind 9 1440 < th dose independent rect. 5 18
696 884.86 radiation 10 1440 < th dose independent rect. 9 5
749 885.33 wind 9 1440 < th dose independent rect. 24 23
761 885.42 wind 9 720 > th dose dependent rect. 16 1
829 885.89 wind 9 1440 < th dose independent no NA NA
835 885.93 wind 9 1440 > th dose independent rect. 9 13
848 885.98 wind 9 1440 < th dose independent rect. 9 23
908 886.30 wind 9 1440 > th dose independent no NA NA