BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0249900 Os07g0249900|AK110676
(159 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0249900 Peptidase M20 family protein 257 3e-69
Os03g0836900 Similar to IAA-amino acid hydrolase 1 (EC 3.5.... 179 6e-46
Os07g0249800 Similar to IAA-amino acid hydrolase 1 (EC 3.5.... 176 5e-45
Os03g0836800 Similar to IAA-amino acid hydrolase 1 (EC 3.5.... 167 2e-42
Os04g0521800 Peptidase M20 family protein 110 5e-25
Os06g0691400 Similar to IAA-amino acid conjugate hydrolase-... 94 6e-20
Os01g0560000 Similar to Auxin amidohydrolase 89 1e-18
Os01g0706900 Similar to Auxin amidohydrolase 81 3e-16
>Os07g0249900 Peptidase M20 family protein
Length = 159
Score = 257 bits (656), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 129/159 (81%), Positives = 129/159 (81%)
Query: 1 AYNVIPQSVEFGGTMRSMTDEGLAYLMKRIKEIVEGQAAVNRCGGGVDFMEESMRPYPAV 60
AYNVIPQSVEFGGTMRSMTDEGLAYLMKRIKEIVEGQAAVNRCGGGVDFMEESMRPYPAV
Sbjct: 1 AYNVIPQSVEFGGTMRSMTDEGLAYLMKRIKEIVEGQAAVNRCGGGVDFMEESMRPYPAV 60
Query: 61 VNDEGMYAHARASAERLLGAGGVRVAPQLMGAEDFGFYAARMPSAFFTIGVGNXXXXXXX 120
VNDEGMYAHARASAERLLGAGGVRVAPQLMGAEDFGFYAARMPSAFFTIGVGN
Sbjct: 61 VNDEGMYAHARASAERLLGAGGVRVAPQLMGAEDFGFYAARMPSAFFTIGVGNATTSSAR 120
Query: 121 XXXXXXXXXFVIDEXXXXXXXXXXXXXXIDYLSKHASSM 159
FVIDE IDYLSKHASSM
Sbjct: 121 AAHTTHSPHFVIDEAALPVGAAVHAAVAIDYLSKHASSM 159
>Os03g0836900 Similar to IAA-amino acid hydrolase 1 (EC 3.5.1.-)
Length = 414
Score = 179 bits (455), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 88/161 (54%), Positives = 108/161 (67%), Gaps = 4/161 (2%)
Query: 1 AYNVIPQSVEFGGTMRSMTDEGLAYLMKRIKEIVEGQAAVNRCGGGVDFMEESMRPYPAV 60
A+NVIP+SV GGT+RSMT +GL+YLM RI+E++EGQAAVNRC VDFME+ +RPYPA
Sbjct: 250 AFNVIPESVTLGGTLRSMTTDGLSYLMNRIREVIEGQAAVNRCTAAVDFMEDKLRPYPAT 309
Query: 61 VNDEGMYAHARASAERLLGAGGVRVAPQLMGAEDFGFYAARMPSAFFTIGVGNXXX---- 116
VNDEGMYAHA+A AE +LG V V+P MGAEDFGFYA R+P+AFF IGVG+
Sbjct: 310 VNDEGMYAHAKAVAESMLGEANVTVSPMCMGAEDFGFYAQRIPAAFFGIGVGSNGNDGGG 369
Query: 117 XXXXXXXXXXXXXFVIDEXXXXXXXXXXXXXXIDYLSKHAS 157
FV+DE I+YL+K+AS
Sbjct: 370 MAETTKNQLHSPHFVVDEEALPVGAAFHAAVAIEYLNKNAS 410
>Os07g0249800 Similar to IAA-amino acid hydrolase 1 (EC 3.5.1.-)
Length = 222
Score = 176 bits (447), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 89/159 (55%), Positives = 101/159 (63%), Gaps = 1/159 (0%)
Query: 1 AYNVIPQSVEFGGTMRSMTDEGLAYLMKRIKEIVEGQAAVNRCGGGVDFMEESMRPYPAV 60
AYNVIP+S GGT RSMTDEGLAYLMKRI+EI+E QA VNRC VDF+EE +RPYPA
Sbjct: 64 AYNVIPESASLGGTFRSMTDEGLAYLMKRIREIIEAQAGVNRCAAAVDFLEEELRPYPAT 123
Query: 61 VNDEGMYAHARASAERLLGAGGVRVAPQLMGAEDFGFYAARMPSAFFTIGVGNXXXX-XX 119
VND+GMY HA+A AE +LG VRVA + MG EDF FYA R P AFF IGVGN
Sbjct: 124 VNDDGMYGHAKAVAEAMLGEANVRVAARSMGGEDFAFYARRSPGAFFFIGVGNETTMGPA 183
Query: 120 XXXXXXXXXXFVIDEXXXXXXXXXXXXXXIDYLSKHASS 158
FV+DE I+YL+KH S
Sbjct: 184 AAVRPVHSPHFVLDERALPVGAALHAAVAIEYLNKHDCS 222
>Os03g0836800 Similar to IAA-amino acid hydrolase 1 (EC 3.5.1.-)
Length = 276
Score = 167 bits (424), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 109/159 (68%), Gaps = 2/159 (1%)
Query: 1 AYNVIPQSVEFGGTMRSMTDEGLAYLMKRIKEIVEGQAAVNRCGGGVDFMEESMRPYPAV 60
A+NVIP+SV GGT+RSMT +G++YLMKRI+E++EGQAAVNRC VDFME+ + PYPA
Sbjct: 114 AFNVIPESVTLGGTLRSMTTDGMSYLMKRIREVIEGQAAVNRCTAAVDFMEDKLPPYPAT 173
Query: 61 VNDEGMYAHARASAERLLGAGGVRVAPQLMGAEDFGFYAARMPSAFFTIGVGNXXX--XX 118
VNDE MYAHA+A AE +LG V+++PQ MGAEDFGFYA R+P+AFF IGVGN
Sbjct: 174 VNDEEMYAHAKAVAESMLGEANVKLSPQGMGAEDFGFYAQRIPAAFFGIGVGNDGGGMAE 233
Query: 119 XXXXXXXXXXXFVIDEXXXXXXXXXXXXXXIDYLSKHAS 157
FV+DE I+YL+K+AS
Sbjct: 234 TTTKNQLHSPHFVVDEEALPVGAAFHAAVAIEYLNKNAS 272
>Os04g0521800 Peptidase M20 family protein
Length = 426
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 67/111 (60%)
Query: 3 NVIPQSVEFGGTMRSMTDEGLAYLMKRIKEIVEGQAAVNRCGGGVDFMEESMRPYPAVVN 62
+ P +EFGGT+RS+T EGL L KR+KE+VEGQAAV+RC G V + YPAV N
Sbjct: 265 DATPPVIEFGGTLRSLTTEGLYRLQKRVKEVVEGQAAVHRCKGVVQIKRDDYPMYPAVFN 324
Query: 63 DEGMYAHARASAERLLGAGGVRVAPQLMGAEDFGFYAARMPSAFFTIGVGN 113
DE ++ H RLLG V+ ++M EDF FY +P F IG+ N
Sbjct: 325 DEKLHHHVETVGRRLLGPDKVKPGEKIMAGEDFAFYQQLVPGVMFGIGIRN 375
>Os06g0691400 Similar to IAA-amino acid conjugate hydrolase-like protein
(Fragment)
Length = 510
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 11 FGGTMRSMTDEGLAYLMKRIKEIVEGQAAVNRCGGGVDFMEESMRPYPAVVNDEGMYAHA 70
GGT R+ ++ + +RI+E++ QA V+ C VDF E + YP VND MYAH
Sbjct: 350 LGGTFRAFSNASFYQVRRRIEEVITAQARVHGCEAAVDFFE-NQSFYPPTVNDARMYAHV 408
Query: 71 RASAERLLGAGGVRVAPQLMGAEDFGFYAARMPSAFFTIGVGN 113
+A A LLGAG R P +MGAEDF FY+ +P+ F+ IGV N
Sbjct: 409 KAVAGELLGAGSYRDVPPMMGAEDFSFYSQVVPAGFYYIGVRN 451
>Os01g0560000 Similar to Auxin amidohydrolase
Length = 442
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%)
Query: 1 AYNVIPQSVEFGGTMRSMTDEGLAYLMKRIKEIVEGQAAVNRCGGGVDFMEESMRPYPAV 60
A+NVIP SV GGT R+ E L +RI+E++ QA+V RC VDF+++ +P
Sbjct: 276 AFNVIPDSVTIGGTFRAFLKESFNQLKQRIEEVIVSQASVQRCNAVVDFLDKDRPFFPPT 335
Query: 61 VNDEGMYAHARASAERLLGAGGVRVAPQLMGAEDFGFYAARMPSAFF 107
+N G++ A ++G VR LMGAEDF FYA +P+ ++
Sbjct: 336 INSAGLHDFFVKVASEMVGPKNVRDKQPLMGAEDFAFYADAIPATYY 382
>Os01g0706900 Similar to Auxin amidohydrolase
Length = 456
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 1 AYNVIPQSVEFGGTMRSMTDEGLAYLMKRIKEIVEGQAAVNRCGGGVDFMEESMRPYPAV 60
A NVIP+S+ GGT R ++EG L +RI+E++ Q+AV RC VDF P
Sbjct: 290 ALNVIPESITIGGTFRVFSNEGFLRLKRRIEEVIVAQSAVYRCAAAVDFHAGGRPLLPPT 349
Query: 61 VNDEGMYAHARASAERLLGAGGVRVAPQ--LMGAEDFGFYAARMP-SAFFTIGVGN 113
+N ++AH +A A LGA + MG+EDF ++ +P S F+ +GV N
Sbjct: 350 INSAALHAHFQAVAAETLGASAAVLGAMEPCMGSEDFAVFSEAVPASHFYFVGVRN 405
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.136 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,467,054
Number of extensions: 179900
Number of successful extensions: 430
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 8
Length of query: 159
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 66
Effective length of database: 12,179,899
Effective search space: 803873334
Effective search space used: 803873334
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 152 (63.2 bits)