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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0836800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to IAA-amino acid hydrolase 1 (EC 3.5.1.-).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.87 (0.0423) R2 : 0.597
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.06 (0.107) R2dC : 0.0881 R2C : 0.0856
β3 : -3.68 (0.163) R2dE : 0.48 R2E : 0.5
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.202 (0.0914) R2dN8 : 0.00591 R2N8 : 0.029
σ : 0.787
deviance : 285.74
__
_____
C
peak time of C : 8.12
E
wheather : temperature
threshold : 33.3
memory length : 4568
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
272.41 0.775 4.76 0.756 1.02 -3.91 -1.03 -3.62 0.314 8.57 29.87 4373 -- --
283.33 0.784 4.88 0.0215 1.02 -3.71 -1.21 -- 0.18 8.68 33.18 4356 -- --
272.21 0.768 4.76 0.692 1.14 -4.4 -- -4.91 0.214 8.45 27.29 5146 -- --
285.83 0.787 4.88 -0.0214 1.03 -3.68 -- -- 0.199 8.25 39.84 4450 -- --
334.74 0.852 4.78 0.623 -- -4.53 -- -4.94 0.199 -- 26.7 5733 -- --
526.64 1.08 4.71 1.7 1.05 -- -0.971 -- 0.919 8.02 -- -- -- --
529.22 1.08 4.71 1.67 1.05 -- -- -- 0.918 7.79 -- -- -- --
344.66 0.865 4.91 -0.0524 -- -3.7 -- -- 0.192 -- 33 4401 -- --
285.74 0.787 4.87 -- 1.06 -3.68 -- -- 0.202 8.12 33.3 4568 -- --
589.24 1.13 4.74 1.68 -- -- -- -- 0.933 -- -- -- -- --
602.43 1.15 4.76 -- 1.07 -- -- -- 0.733 7.68 -- -- -- --
344.69 0.865 4.91 -- -- -3.66 -- -- 0.203 -- 33 4400 -- --
663.63 1.2 4.78 -- -- -- -- -- 0.747 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 259.04 temperature 15 4320 > th dose dependent rect. 6 1
2 259.07 temperature 20 14400 < th dose dependent rect. 4 2
4 259.20 temperature 30 4320 < th dose dependent rect. 6 1
15 260.61 temperature 20 43200 > th dose dependent rect. 19 1
20 260.83 temperature 15 43200 > th dose dependent rect. 4 1
32 261.38 temperature 25 43200 < th dose independent rect. 14 10
48 261.90 temperature 30 4320 < th dose dependent rect. 4 4
52 261.99 temperature 25 43200 > th dose independent rect. 14 10
56 262.03 temperature 15 43200 > th dose dependent rect. 19 11
192 263.16 temperature 15 4320 > th dose dependent rect. 2 7
218 263.37 temperature 15 43200 > th dose dependent sin 12 NA
224 263.41 temperature 30 4320 < th dose dependent rect. 2 7
230 263.50 temperature 25 43200 < th dose independent rect. 19 2
291 263.84 temperature 25 43200 > th dose independent rect. 20 1
300 263.88 temperature 25 43200 < th dose dependent rect. 21 9
386 264.19 temperature 25 43200 < th dose independent sin 16 NA
418 264.30 temperature 30 43200 < th dose dependent rect. 21 1
636 264.98 temperature 25 43200 > th dose independent sin 16 NA
781 265.50 temperature 30 4320 < th dose dependent rect. 23 14
787 265.53 temperature 25 43200 < th dose dependent sin 11 NA
822 265.62 temperature 30 4320 < th dose dependent sin 6 NA