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Os01g0560000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Auxin amidohydrolase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0166) R2 : 0.683
β1 : 1.38 (0.0606) R2dD : 0.373 R2D : 0.322
β2 : 0.896 (0.0417) R2dC : 0.323 R2C : 0.306
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.26 (0.0353) R2dN8 : 0.0503 R2N8 : -0.0117
σ : 0.311
deviance : 44.13
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_____
C
peak time of C : 20.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
35.22 0.279 12 0.97 0.896 -0.569 -0.201 -2.68 0.197 20.5 12.95 7064 -- --
37.94 0.287 11.9 1.65 0.77 -0.427 -0.0284 -- 0.396 20.6 25.87 7005 -- --
35.33 0.277 12 0.975 0.903 -0.57 -- -2.72 0.197 20.5 11.6 6841 -- --
36.25 0.28 11.9 1.51 0.926 -0.45 -- -- 0.247 20.6 27.47 2570 -- --
80.18 0.417 12 0.983 -- -0.577 -- -2.66 0.19 -- 12.51 7227 -- --
43.98 0.311 11.9 1.37 0.896 -- -0.218 -- 0.26 20.4 -- -- -- --
44.13 0.311 11.9 1.38 0.896 -- -- -- 0.26 20.4 -- -- -- --
78.54 0.413 11.9 1.55 -- -0.377 -- -- 0.29 -- 33.85 7117 -- --
92.38 0.448 11.9 -- 0.9 -0.208 -- -- 0.0642 20.6 32.21 2473 -- --
88.81 0.44 11.9 1.37 -- -- -- -- 0.25 -- -- -- -- --
94.09 0.454 11.9 -- 0.89 -- -- -- 0.106 20.5 -- -- -- --
135.37 0.542 11.9 -- -- -0.222 -- -- 0.199 -- 33.9 7129 -- --
138.44 0.549 11.9 -- -- -- -- -- 0.0981 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.99 wind 9 43200 > th dose independent rect. 19 10
3 33.02 wind 9 43200 > th dose dependent rect. 19 11
6 33.10 wind 9 43200 < th dose independent rect. 19 11
28 33.41 wind 9 43200 < th dose independent rect. 19 6
31 33.42 wind 7 43200 > th dose dependent rect. 19 1
75 34.13 wind 9 43200 > th dose dependent rect. 17 14
77 34.18 wind 5 43200 > th dose independent rect. 9 5
80 34.21 wind 5 43200 < th dose independent rect. 11 1
84 34.28 wind 5 43200 > th dose independent rect. 5 9
88 34.30 wind 5 43200 > th dose independent rect. 11 1
91 34.30 humidity 70 43200 > th dose dependent rect. 14 11
93 34.32 wind 5 43200 > th dose dependent rect. 19 20
95 34.33 wind 5 43200 < th dose independent rect. 5 9
96 34.34 wind 5 43200 < th dose independent rect. 9 5
109 34.43 wind 5 43200 > th dose independent sin 4 NA
111 34.44 wind 5 43200 > th dose independent rect. 19 20
116 34.45 wind 7 43200 > th dose independent rect. 17 20
121 34.46 humidity 70 43200 > th dose dependent sin 16 NA
123 34.47 wind 5 43200 < th dose independent sin 4 NA
126 34.48 wind 5 43200 < th dose independent rect. 20 19
130 34.49 wind 5 43200 > th dose independent rect. 20 2
132 34.50 temperature 20 43200 < th dose independent rect. 21 1
134 34.50 wind 7 43200 < th dose independent rect. 17 20
141 34.52 temperature 20 43200 > th dose independent rect. 20 1
142 34.52 wind 5 43200 < th dose independent rect. 20 2
154 34.54 wind 5 43200 > th dose dependent rect. 5 9
167 34.58 wind 7 43200 > th dose independent rect. 19 16
168 34.58 humidity 70 43200 > th dose dependent rect. 16 8
176 34.60 wind 5 43200 > th dose independent rect. 24 15
197 34.64 wind 5 43200 < th dose independent rect. 24 15
239 34.72 wind 5 43200 > th dose dependent rect. 24 15
240 34.73 wind 9 43200 < th dose independent rect. 19 16
251 34.74 wind 9 43200 > th dose dependent rect. 17 1
281 34.79 wind 9 43200 > th dose independent rect. 17 14
324 34.84 wind 3 43200 > th dose dependent rect. 11 1
333 34.85 wind 5 43200 > th dose dependent sin 4 NA
334 34.85 wind 1 43200 > th dose dependent rect. 8 1
359 34.88 atmosphere 1000 43200 < th dose dependent rect. 10 1
371 34.90 wind 9 43200 < th dose dependent rect. 8 1
380 34.92 humidity 80 43200 > th dose independent rect. 24 21
390 34.94 wind 5 43200 > th dose dependent rect. 6 1
435 35.00 temperature 20 43200 > th dose independent rect. 14 8
439 35.00 radiation 20 1440 < th dose dependent rect. 11 8
441 35.00 radiation 20 1440 < th dose dependent rect. 11 16
444 35.00 radiation 20 1440 < th dose dependent rect. 11 19
457 35.01 radiation 20 1440 < th dose dependent rect. 11 13
459 35.01 temperature 30 14400 > th dose dependent rect. 18 15
463 35.01 humidity 70 43200 > th dose dependent rect. 8 20
496 35.05 temperature 30 14400 > th dose dependent rect. 18 1
577 35.10 temperature 10 4320 > th dose dependent rect. 18 1
587 35.11 radiation 20 1440 < th dose dependent sin 16 NA
590 35.11 radiation 1 1440 < th dose dependent rect. 8 9
607 35.13 atmosphere 995 43200 < th dose dependent rect. 15 1
624 35.15 wind 5 43200 > th dose independent rect. 6 1
631 35.15 radiation 20 1440 > th dose dependent rect. 15 1
671 35.18 wind 9 43200 < th dose independent sin 11 NA
676 35.18 humidity 80 43200 < th dose independent rect. 23 21
703 35.20 radiation 20 1440 > th dose independent rect. 15 2
731 35.21 humidity 70 43200 > th dose dependent rect. 11 22
737 35.22 temperature 30 4320 < th dose dependent rect. 18 1
758 35.23 radiation 40 1440 < th dose dependent rect. 14 4
773 35.23 radiation 40 1440 < th dose dependent rect. 14 14
795 35.25 radiation 1 1440 < th dose independent rect. 11 1
796 35.25 atmosphere 995 43200 < th dose independent rect. 14 2
801 35.25 temperature 30 14400 < th dose independent rect. 18 15
805 35.25 radiation 1 1440 < th dose dependent rect. 11 1
825 35.26 radiation 20 1440 > th dose independent sin 14 NA
835 35.26 humidity 70 43200 > th dose dependent no NA NA
854 35.26 humidity 70 43200 > th dose dependent rect. 17 23
871 35.28 wind 9 43200 > th dose independent sin 11 NA
872 35.28 wind 5 43200 < th dose independent rect. 6 2
874 35.28 atmosphere 995 43200 > th dose independent rect. 14 2
875 35.28 temperature 20 43200 < th dose independent rect. 14 8
900 35.29 humidity 80 43200 > th dose dependent rect. 20 5
904 35.29 humidity 70 43200 > th dose dependent rect. 2 23
955 35.33 radiation 20 1440 < th dose independent rect. 15 2
977 35.33 humidity 70 43200 > th dose dependent rect. 23 23
990 35.34 radiation 1 1440 > th dose dependent rect. 14 4