FiT-DB / Search/ Help/ Sample detail

Os06g0691400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to IAA-amino acid conjugate hydrolase-like protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.95 (0.0362) R2 : 0.731
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.14 (0.0948) R2dC : 0.657 R2C : 0.606
β3 : -1.13 (0.083) R2dE : 0.112 R2E : 0.073
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.267 (0.0761) R2dN8 : 0.0096 R2N8 : 0.00424
σ : 0.678
deviance : 212.14
__
_____
C
peak time of C : 6.54
E
wheather : temperature
threshold : 20
memory length : 8
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 22
open length of G : 6.03

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
197.73 0.661 7.94 0.183 3.15 -1.14 1.29 1.82 -0.225 6.58 20 9 22 6.02
207.18 0.67 7.95 0.0964 3.14 -1.16 1.42 -- -0.246 6.51 20 8 22 6.03
201.89 0.662 7.94 0.204 3.16 -1.15 -- 1.88 -0.229 6.57 20.04 8 22 6.01
211.97 0.678 7.95 0.0903 3.14 -1.15 -- -- -0.248 6.54 20 8 22 6.03
681.1 1.22 8.01 0.171 -- -1.25 -- 0.579 -0.158 -- 20.7 23 21.4 5.92
261.68 0.758 7.96 -0.00537 3.11 -- 1.2 -- -0.317 7.42 -- -- -- --
265.58 0.763 7.96 0.0226 3.11 -- -- -- -0.319 7.44 -- -- -- --
681.9 1.22 8.01 0.136 -- -1.24 -- -- -0.167 -- 20.71 27 21.4 5.91
212.14 0.678 7.95 -- 3.14 -1.13 -- -- -0.267 6.54 20 8 22 6.03
781.73 1.31 8.03 0.0716 -- -- -- -- -0.269 -- -- -- -- --
265.59 0.762 7.96 -- 3.11 -- -- -- -0.321 7.44 -- -- -- --
682.39 1.22 8.01 -- -- -1.24 -- -- -0.182 -- 20.7 27 21.4 5.85
781.86 1.31 8.03 -- -- -- -- -- -0.277 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 199.00 temperature 20.0 10 > th dose independent rect. 22 6
3 206.48 temperature 20.0 270 > th dose independent rect. 22 3
11 209.96 radiation 1.0 1440 < th dose independent rect. 11 1
12 209.96 radiation 1.0 1440 < th dose dependent rect. 11 1
18 211.82 humidity 60.0 14400 > th dose independent rect. 4 4
19 212.19 humidity 50.0 720 > th dose dependent rect. 15 11
22 212.73 humidity 90.0 720 < th dose dependent rect. 19 2
30 214.89 temperature 15.0 10 > th dose dependent rect. 22 6
34 215.18 humidity 80.0 720 < th dose independent rect. 19 1
41 215.80 wind 1.0 90 < th dose independent rect. 22 5
43 215.98 humidity 80.0 720 < th dose dependent rect. 18 4
49 216.11 wind 1.0 90 < th dose independent rect. 1 4
50 216.19 radiation 1.0 1440 < th dose independent rect. 9 6
51 216.19 radiation 1.0 1440 < th dose dependent rect. 9 6
59 216.56 temperature 20.0 10 > th dose independent rect. 7 21
61 216.61 radiation 1.0 1440 < th dose independent rect. 11 4
62 216.61 radiation 1.0 1440 < th dose dependent rect. 11 4
66 216.66 radiation 1.0 1440 > th dose independent rect. 13 2
85 217.40 wind 1.0 90 < th dose independent rect. 15 12
93 217.77 radiation 1.0 1440 > th dose independent rect. 11 4
101 218.01 humidity 80.0 1440 < th dose dependent sin 14 NA
106 218.11 wind 1.0 90 < th dose independent rect. 17 10
121 218.26 humidity 80.0 1440 < th dose dependent rect. 15 15
146 218.66 wind 1.0 90 < th dose independent rect. 11 16
154 218.82 precipitation 0.1 270 > th dose independent rect. 2 2
158 218.86 radiation 1.0 1440 > th dose independent rect. 9 6
162 218.93 radiation 10.0 1440 < th dose dependent rect. 11 17
164 218.95 humidity 70.0 720 > th dose independent rect. 16 10
165 218.95 precipitation 0.1 270 > th dose dependent rect. 2 2
169 219.01 humidity 90.0 1440 < th dose dependent rect. 12 10
181 219.10 radiation 10.0 1440 < th dose dependent rect. 11 9
189 219.14 radiation 10.0 1440 < th dose dependent rect. 11 13
193 219.19 temperature 20.0 10 > th dose independent rect. 18 10
198 219.21 wind 3.0 90 < th dose independent rect. 3 4
220 219.41 humidity 70.0 720 > th dose independent rect. 15 12
256 219.65 radiation 1.0 1440 > th dose independent rect. 11 1
272 219.79 humidity 50.0 1440 > th dose dependent rect. 12 10
276 219.87 wind 1.0 90 < th dose independent rect. 7 21
295 220.04 wind 5.0 90 < th dose dependent rect. 3 4
304 220.12 temperature 15.0 270 > th dose dependent rect. 22 3
320 220.28 wind 1.0 90 < th dose independent rect. 9 19
322 220.33 precipitation 0.1 270 < th dose independent rect. 3 2
323 220.33 precipitation 0.1 270 < th dose dependent rect. 3 2
324 220.34 humidity 90.0 720 > th dose dependent rect. 20 1
347 220.60 humidity 50.0 720 > th dose dependent rect. 15 4
362 220.76 wind 3.0 30 < th dose dependent rect. 11 17
375 220.87 wind 1.0 90 < th dose dependent rect. 23 4
379 220.92 wind 5.0 270 < th dose independent rect. 3 2
382 220.93 humidity 80.0 1440 < th dose independent rect. 7 14
393 220.99 humidity 90.0 720 > th dose dependent rect. 20 3
397 221.04 humidity 80.0 1440 > th dose independent rect. 7 15
398 221.05 humidity 70.0 1440 > th dose independent sin 14 NA
411 221.17 humidity 50.0 1440 > th dose dependent rect. 12 1
427 221.29 humidity 80.0 1440 < th dose independent rect. 3 18
430 221.30 humidity 90.0 1440 < th dose dependent rect. 12 1
443 221.38 humidity 80.0 1440 > th dose independent rect. 3 19
456 221.44 wind 9.0 270 < th dose independent rect. 5 22
474 221.54 wind 5.0 10 < th dose dependent rect. 4 3
481 221.62 humidity 70.0 1440 > th dose independent rect. 14 15
482 221.62 wind 5.0 10 < th dose dependent rect. 4 5
488 221.65 humidity 80.0 1440 > th dose independent rect. 11 10
492 221.66 humidity 80.0 1440 > th dose independent rect. 11 3
494 221.66 wind 3.0 30 < th dose dependent rect. 15 13
498 221.69 precipitation 0.1 90 < th dose independent rect. 3 4
499 221.69 precipitation 0.1 90 < th dose dependent rect. 3 4
504 221.71 humidity 70.0 1440 > th dose independent rect. 14 6
603 222.17 humidity 60.0 720 > th dose independent rect. 15 19
606 222.19 humidity 50.0 1440 > th dose dependent sin 19 NA
614 222.23 wind 3.0 30 < th dose dependent rect. 18 10
640 222.34 wind 7.0 270 < th dose dependent rect. 3 2
668 222.48 wind 9.0 90 < th dose independent rect. 7 20
670 222.49 humidity 80.0 1440 > th dose independent sin 22 NA
684 222.54 atmosphere 1005.0 720 < th dose independent rect. 20 5
695 222.55 wind 3.0 30 < th dose dependent rect. 7 21
726 222.73 atmosphere 1015.0 10 < th dose independent rect. 7 21
728 222.74 humidity 80.0 1440 < th dose independent sin 23 NA
735 222.78 radiation 10.0 1440 < th dose dependent sin 17 NA
750 222.82 atmosphere 1015.0 90 < th dose independent rect. 7 20
763 222.85 humidity 90.0 1440 < th dose dependent rect. 15 1
785 222.95 wind 3.0 10 < th dose independent rect. 4 3
789 222.96 wind 9.0 10 < th dose independent rect. 7 21
796 222.98 wind 9.0 90 < th dose dependent rect. 15 12
816 223.07 humidity 80.0 1440 < th dose independent rect. 11 3
830 223.12 humidity 80.0 1440 < th dose independent rect. 11 23
839 223.16 humidity 50.0 720 > th dose dependent rect. 7 19
854 223.22 radiation 1.0 1440 > th dose independent rect. 9 1
865 223.27 humidity 80.0 1440 < th dose independent rect. 19 22
866 223.27 humidity 80.0 1440 < th dose dependent no NA NA
869 223.28 humidity 70.0 1440 < th dose independent sin 14 NA
874 223.28 humidity 80.0 1440 < th dose dependent rect. 5 23
878 223.29 humidity 80.0 1440 < th dose dependent rect. 23 23
963 223.49 humidity 70.0 1440 < th dose independent rect. 15 5