Os07g0249900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase M20 family protein.
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Os07g0249900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase M20 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.77 | 0.318 | 11.7 | 1.58 | 1.41 | 1.64 | -0.42 | -0.987 | 0.119 | 23.4 | 24 | 5129 | -- | -- |
| 45.47 | 0.314 | 11.7 | 1.62 | 1.41 | 2.14 | -0.446 | -- | 0.1 | 23.4 | 22.61 | 6630 | -- | -- |
| 46.51 | 0.318 | 11.7 | 1.6 | 1.41 | 1.62 | -- | -1 | 0.12 | 23.4 | 24.13 | 5052 | -- | -- |
| 46.32 | 0.317 | 11.7 | 1.63 | 1.41 | 2.14 | -- | -- | 0.104 | 23.4 | 22.65 | 6540 | -- | -- |
| 135.27 | 0.545 | 11.7 | 1.08 | -- | 2.1 | -- | -0.394 | 0.00539 | -- | 24.13 | 5052 | -- | -- |
| 92.56 | 0.451 | 11.8 | 0.499 | 1.36 | -- | -0.403 | -- | -0.365 | 23.4 | -- | -- | -- | -- |
| 93.26 | 0.452 | 11.8 | 0.515 | 1.36 | -- | -- | -- | -0.363 | 23.4 | -- | -- | -- | -- |
| 135.54 | 0.545 | 11.7 | 1.02 | -- | 2.14 | -- | -- | -0.00531 | -- | 24.13 | 5052 | -- | -- |
| 81.16 | 0.422 | 11.8 | -- | 1.12 | 1.34 | -- | -- | -0.262 | 22.5 | 57.31 | 5699 | -- | -- |
| 209.02 | 0.676 | 11.8 | 0.55 | -- | -- | -- | -- | -0.35 | -- | -- | -- | -- | -- |
| 100.26 | 0.468 | 11.8 | -- | 1.36 | -- | -- | -- | -0.421 | 23.4 | -- | -- | -- | -- |
| 149.37 | 0.571 | 11.7 | -- | -- | 2.1 | -- | -- | -0.173 | -- | 57.31 | 5699 | -- | -- |
| 217.01 | 0.688 | 11.8 | -- | -- | -- | -- | -- | -0.411 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.60 | temperature | 25 | 4320 | < th | dose dependent | rect. | 13 | 15 |
| 7 | 45.65 | temperature | 25 | 4320 | < th | dose dependent | sin | 15 | NA |
| 12 | 45.67 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 14 | 45.68 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 28 | 45.76 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 2 |
| 41 | 45.82 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 14 |
| 67 | 45.92 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 80 | 45.96 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 2 |
| 119 | 46.07 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 23 |
| 123 | 46.08 | temperature | 25 | 4320 | < th | dose dependent | rect. | 15 | 23 |
| 124 | 46.09 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 137 | 46.10 | temperature | 25 | 4320 | < th | dose dependent | rect. | 19 | 23 |
| 142 | 46.11 | temperature | 25 | 4320 | < th | dose dependent | rect. | 5 | 23 |
| 154 | 46.12 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 23 |
| 162 | 46.14 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 23 |
| 296 | 46.39 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 297 | 46.39 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 10 |
| 306 | 46.40 | temperature | 15 | 1440 | > th | dose dependent | sin | 12 | NA |
| 328 | 46.44 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 8 |
| 329 | 46.44 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 15 |
| 334 | 46.45 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 350 | 46.47 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 358 | 46.48 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 2 |
| 371 | 46.50 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 8 |
| 423 | 46.57 | temperature | 20 | 4320 | < th | dose independent | rect. | 12 | 16 |
| 526 | 46.67 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 584 | 46.72 | temperature | 20 | 4320 | > th | dose independent | rect. | 12 | 19 |
| 596 | 46.73 | temperature | 20 | 4320 | < th | dose independent | rect. | 12 | 19 |
| 648 | 46.77 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 665 | 46.79 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 715 | 46.83 | temperature | 25 | 4320 | < th | dose dependent | sin | 6 | NA |
| 862 | 46.93 | radiation | 1 | 14400 | < th | dose independent | rect. | 1 | 7 |
| 887 | 46.94 | radiation | 1 | 14400 | < th | dose independent | rect. | 21 | 11 |
| 898 | 46.94 | temperature | 10 | 4320 | > th | dose dependent | rect. | 8 | 20 |
| 904 | 46.95 | radiation | 1 | 14400 | > th | dose independent | sin | 9 | NA |
| 946 | 46.97 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 4 |