BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0249900 Os07g0249900|AK110676
(159 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G02875.1 | chr3:631993-633859 FORWARD LENGTH=443 113 5e-26
AT5G54140.1 | chr5:21965833-21967834 FORWARD LENGTH=429 109 7e-25
AT1G44350.1 | chr1:16834749-16838201 REVERSE LENGTH=465 96 1e-20
AT1G51760.1 | chr1:19199562-19201424 FORWARD LENGTH=441 89 1e-18
AT5G56660.1 | chr5:22933278-22935011 FORWARD LENGTH=440 87 3e-18
AT1G51780.1 | chr1:19204602-19206453 FORWARD LENGTH=436 85 2e-17
AT5G56650.1 | chr5:22930825-22932488 FORWARD LENGTH=439 84 2e-17
>AT3G02875.1 | chr3:631993-633859 FORWARD LENGTH=443
Length = 442
Score = 113 bits (282), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 82/158 (51%), Gaps = 3/158 (1%)
Query: 1 AYNVIPQSVEFGGTMRSMTDEGLAYLMKRIKEIVEGQAAVNRCGGGVDFMEESMRPYPAV 60
A NVIPQS +FGGT RS++++GL ++ +RIKEI E QA+V RC V+F E+ +P +
Sbjct: 279 AQNVIPQSAKFGGTFRSLSNDGLLFIQRRIKEISEAQASVYRCKAEVNFEEKKPSLHPVM 338
Query: 61 VNDEGMYAHARASAERLLGAGGVRVAPQLMGAEDFGFYAARMPSAFFTIGVGNXXXXXXX 120
NDEG+Y H + AE ++G P MG EDF F+ + +A F +GV N
Sbjct: 339 NNDEGLYEHGKKVAEAMIGKNNFHDFPVTMGGEDFSFFTQKTKAAIFVLGVKN---ETLG 395
Query: 121 XXXXXXXXXFVIDEXXXXXXXXXXXXXXIDYLSKHASS 158
F +DE + YL +H S
Sbjct: 396 AGKPLHSPYFFVDEEALPVGAALHAAMAVSYLDEHGHS 433
>AT5G54140.1 | chr5:21965833-21967834 FORWARD LENGTH=429
Length = 428
Score = 109 bits (272), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 70/112 (62%)
Query: 2 YNVIPQSVEFGGTMRSMTDEGLAYLMKRIKEIVEGQAAVNRCGGGVDFMEESMRPYPAVV 61
++VIP VEFGGT+RS+T G+ +L+KR+KE+VEGQA V RC +D E+ YPA V
Sbjct: 270 FDVIPAYVEFGGTLRSLTTNGINWLIKRLKEVVEGQAEVQRCKADIDMHEDDHPMYPATV 329
Query: 62 NDEGMYAHARASAERLLGAGGVRVAPQLMGAEDFGFYAARMPSAFFTIGVGN 113
ND ++ + LLG V+ A ++M EDF FY ++P + IG+ N
Sbjct: 330 NDHKLHEFTEKVLKLLLGPEKVKPANKVMAGEDFAFYQQKIPGYYIGIGIRN 381
>AT1G44350.1 | chr1:16834749-16838201 REVERSE LENGTH=465
Length = 464
Score = 95.5 bits (236), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 65/113 (57%)
Query: 1 AYNVIPQSVEFGGTMRSMTDEGLAYLMKRIKEIVEGQAAVNRCGGGVDFMEESMRPYPAV 60
+ +V P +V GGT R+ ++ YL KRI+E++ Q V C V+F E+ YP
Sbjct: 311 SLDVAPDTVVLGGTFRAFSNSSFYYLKKRIQEVLMDQVGVFGCQATVNFFEKQNAIYPPT 370
Query: 61 VNDEGMYAHARASAERLLGAGGVRVAPQLMGAEDFGFYAARMPSAFFTIGVGN 113
N++ Y H + LLG +APQ+MGAEDF FY+ +P+AF+ IG+ N
Sbjct: 371 TNNDATYNHLKKVTIDLLGDSHFTLAPQMMGAEDFAFYSEIIPAAFYFIGIRN 423
>AT1G51760.1 | chr1:19199562-19201424 FORWARD LENGTH=441
Length = 440
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 64/113 (56%)
Query: 1 AYNVIPQSVEFGGTMRSMTDEGLAYLMKRIKEIVEGQAAVNRCGGGVDFMEESMRPYPAV 60
A+NVIP SV GGT R+ + + L KRI++++ QA+VN C VDF+EE +P
Sbjct: 275 AFNVIPDSVTIGGTFRAFSTKSFMQLKKRIEQVITRQASVNMCNATVDFIEEEKPFFPPT 334
Query: 61 VNDEGMYAHARASAERLLGAGGVRVAPQLMGAEDFGFYAARMPSAFFTIGVGN 113
VND+ ++ + + +LG LMG+EDF FY +P F +G+ N
Sbjct: 335 VNDKALHQFFKNVSGDMLGIENYVEMQPLMGSEDFSFYQQAIPGHFSFVGMQN 387
>AT5G56660.1 | chr5:22933278-22935011 FORWARD LENGTH=440
Length = 439
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 2/111 (1%)
Query: 1 AYNVIPQSVEFGGTMRSMTDEGLAYLMKRIKEIVEGQAAVNRCGGGVDFMEESMRPYPAV 60
A+NVIP S+ GGT+R+ T G L +R+KE++ QAAV+RC V+ P P
Sbjct: 278 AFNVIPDSITIGGTLRAFT--GFTQLQQRVKEVITKQAAVHRCNASVNLTPNGREPMPPT 335
Query: 61 VNDEGMYAHARASAERLLGAGGVRVAPQLMGAEDFGFYAARMPSAFFTIGV 111
VN++ +Y + LLG A +MG+EDF ++A +P F +G+
Sbjct: 336 VNNKDLYKQFKKVVRDLLGQEAFVEAAPVMGSEDFSYFAETIPGHFSLLGM 386
>AT1G51780.1 | chr1:19204602-19206453 FORWARD LENGTH=436
Length = 435
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 63/113 (55%)
Query: 1 AYNVIPQSVEFGGTMRSMTDEGLAYLMKRIKEIVEGQAAVNRCGGGVDFMEESMRPYPAV 60
A+NVIP SV GGT R++ + L +RI +++ QA+VN C VDF+E+ P+P
Sbjct: 275 AFNVIPDSVTIGGTFRALLPKSFEQLKQRIVQVITTQASVNMCNATVDFLEDETPPFPPT 334
Query: 61 VNDEGMYAHARASAERLLGAGGVRVAPQLMGAEDFGFYAARMPSAFFTIGVGN 113
VN++ ++ + + +LG +M +EDF FY +P F +G+ N
Sbjct: 335 VNNKTLHLFYKNVSVDMLGIENYVETLPVMVSEDFAFYQQAIPGHFSFVGMQN 387
>AT5G56650.1 | chr5:22930825-22932488 FORWARD LENGTH=439
Length = 438
Score = 84.3 bits (207), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 2/111 (1%)
Query: 1 AYNVIPQSVEFGGTMRSMTDEGLAYLMKRIKEIVEGQAAVNRCGGGVDFMEESMRPYPAV 60
A+NVIP S+ GGT+R+ T G L +RIKEI+ QAAV+RC V+ +P P
Sbjct: 277 AFNVIPDSITIGGTLRAFT--GFTQLQERIKEIITKQAAVHRCNASVNLAPNGNQPMPPT 334
Query: 61 VNDEGMYAHARASAERLLGAGGVRVAPQLMGAEDFGFYAARMPSAFFTIGV 111
VN+ +Y + LLG A MG+EDF ++A +P F +G+
Sbjct: 335 VNNMDLYKKFKKVVRDLLGQEAFVEAVPEMGSEDFSYFAETIPGHFSLLGM 385
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,625,734
Number of extensions: 91455
Number of successful extensions: 190
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 7
Length of query: 159
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 69
Effective length of database: 8,639,129
Effective search space: 596099901
Effective search space used: 596099901
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)