BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0161000 Os07g0161000|AK065877
(547 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0161000 Tetratricopeptide-like helical domain containi... 1055 0.0
Os04g0437500 Tetratricopeptide-like helical domain containi... 253 3e-67
Os08g0525600 Similar to Peptidylprolyl isomerase 80 4e-15
Os04g0352400 Peptidylprolyl isomerase, FKBP-type domain con... 77 3e-14
Os12g0145500 Peptidylprolyl isomerase, FKBP-type domain con... 77 4e-14
Os02g0491400 Similar to Peptidylprolyl isomerase 75 1e-13
>Os07g0161000 Tetratricopeptide-like helical domain containing protein
Length = 547
Score = 1055 bits (2729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 521/547 (95%), Positives = 521/547 (95%)
Query: 1 MMDPEMMRLAQEQMSKMSPADLARMQQQLLSNPNLVKLASESMKNMRADDFRRAAQQMNQ 60
MMDPEMMRLAQEQMSKMSPADLARMQQQLLSNPNLVKLASESMKNMRADDFRRAAQQMNQ
Sbjct: 1 MMDPEMMRLAQEQMSKMSPADLARMQQQLLSNPNLVKLASESMKNMRADDFRRAAQQMNQ 60
Query: 61 TRPDEMLDMAEKLANANPEEVAAMKVQAEQQMSYVISGAKMLKQQGNELHRCEQYSEAAA 120
TRPDEMLDMAEKLANANPEEVAAMKVQAEQQMSYVISGAKMLKQQGNELHRCEQYSEAAA
Sbjct: 61 TRPDEMLDMAEKLANANPEEVAAMKVQAEQQMSYVISGAKMLKQQGNELHRCEQYSEAAA 120
Query: 121 KYKLAKDNLKSIPSQSAHSLQLVCTLNLMACYLKTRNFEECINEGSEVLTYDSSNVKAYY 180
KYKLAKDNLKSIPSQSAHSLQLVCTLNLMACYLKTRNFEECINEGSEVLTYDSSNVKAYY
Sbjct: 121 KYKLAKDNLKSIPSQSAHSLQLVCTLNLMACYLKTRNFEECINEGSEVLTYDSSNVKAYY 180
Query: 181 RRGQAYKELGNLEAAVGDLSKAHELSPDDETIAAVLRDAEEKLAVEGKGAKHPKGVVIEE 240
RRGQAYKELGNLEAAVGDLSKAHELSPDDETIAAVLRDAEEKLAVEGKGAKHPKGVVIEE
Sbjct: 181 RRGQAYKELGNLEAAVGDLSKAHELSPDDETIAAVLRDAEEKLAVEGKGAKHPKGVVIEE 240
Query: 241 VVDDAXXXXXXXXXXXPGYTVSQPPEEGNSRPSGSSSIDANGLSKLGMQGMSPELVKTAS 300
VVDDA PGYTVSQPPEEGNSRPSGSSSIDANGLSKLGMQGMSPELVKTAS
Sbjct: 241 VVDDASEPSSSQRSSSPGYTVSQPPEEGNSRPSGSSSIDANGLSKLGMQGMSPELVKTAS 300
Query: 301 DMIGTMKPEELQKMFEAASSLHGTSSSPPNLGPNMPEMSPEMFKMASDMIGNMSPDELQN 360
DMIGTMKPEELQKMFEAASSLHGTSSSPPNLGPNMPEMSPEMFKMASDMIGNMSPDELQN
Sbjct: 301 DMIGTMKPEELQKMFEAASSLHGTSSSPPNLGPNMPEMSPEMFKMASDMIGNMSPDELQN 360
Query: 361 MLNFASNMGGPSASPLRPENKLXXXXXXXXXXXXXXXVDNSQPSSSQNVMENPHEILSNQ 420
MLNFASNMGGPSASPLRPENKL VDNSQPSSSQNVMENPHEILSNQ
Sbjct: 361 MLNFASNMGGPSASPLRPENKLQSSSRATTSSTSQRSVDNSQPSSSQNVMENPHEILSNQ 420
Query: 421 RMGESSSPGAPSTADMQETMRNAMKDPAMRKMYASMMKNISPEMMSSMSEQFGMKMTKED 480
RMGESSSPGAPSTADMQETMRNAMKDPAMRKMYASMMKNISPEMMSSMSEQFGMKMTKED
Sbjct: 421 RMGESSSPGAPSTADMQETMRNAMKDPAMRKMYASMMKNISPEMMSSMSEQFGMKMTKED 480
Query: 481 AAKAQEALSSLSPEALDRMMKWMDRAQQGVEAAKKTKNWLLGRKGLVLAIVMLILAFILR 540
AAKAQEALSSLSPEALDRMMKWMDRAQQGVEAAKKTKNWLLGRKGLVLAIVMLILAFILR
Sbjct: 481 AAKAQEALSSLSPEALDRMMKWMDRAQQGVEAAKKTKNWLLGRKGLVLAIVMLILAFILR 540
Query: 541 QLGFIGG 547
QLGFIGG
Sbjct: 541 QLGFIGG 547
>Os04g0437500 Tetratricopeptide-like helical domain containing protein
Length = 392
Score = 253 bits (646), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 137/228 (60%), Positives = 176/228 (77%), Gaps = 5/228 (2%)
Query: 1 MMDPEMMRLAQEQMSKMSPADLARMQQQLLSNPNLVKLASESMKNMRADDFRRAAQQMNQ 60
MMDPEMMR+AQEQM +M PA LA MQQQL+SNP+L++ A+E +K + DD RRA +QM++
Sbjct: 1 MMDPEMMRVAQEQMRRMPPAALAAMQQQLMSNPSLLRFATEGIKTLTPDDLRRAGEQMSR 60
Query: 61 TRPDEMLDMAEKLANANPEEVAA-MK-VQAEQQM--SYV-ISGAKMLKQQGNELHRCEQY 115
T +E+L M+ +LA A+PEE+AA MK QAEQQ SY +SGA+ LK QGN L R ++
Sbjct: 61 TSAEEVLGMSRRLAAASPEELAATMKNAQAEQQRASSYAAVSGARALKDQGNALFRLARH 120
Query: 116 SEAAAKYKLAKDNLKSIPSQSAHSLQLVCTLNLMACYLKTRNFEECINEGSEVLTYDSSN 175
++AAAKY LA DNL+S+PS ++ SL+ VC +NLMAC+LKT EC+ GSEVL D N
Sbjct: 121 ADAAAKYALAVDNLRSVPSSASRSLRAVCGVNLMACHLKTGRLAECVELGSEVLGLDPGN 180
Query: 176 VKAYYRRGQAYKELGNLEAAVGDLSKAHELSPDDETIAAVLRDAEEKL 223
VKA+YRRGQAY+ELG +EAAV DL +AHELSP+++ IA LRDAEEKL
Sbjct: 181 VKAHYRRGQAYRELGRMEAAVADLRRAHELSPEEDAIADALRDAEEKL 228
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/110 (50%), Positives = 84/110 (76%), Gaps = 3/110 (2%)
Query: 440 MRNAMKDPAMRKMYASMMKNISPEMMSSMSEQFGMKMTKEDAAKAQEALSSLSPEALDRM 499
M N+M DPAM KM AS+++ + PE +S + +QFG+ ++++DAA+ Q+A+ LSPE L+++
Sbjct: 282 MMNSMGDPAMGKMVASVVQGMDPETVSIIGKQFGVDLSRDDAARLQDAMKKLSPENLEKV 341
Query: 500 MKWMDRAQQGVEAAKKTKNWLLG-RKGL-VLAIVMLILAFILRQ-LGFIG 546
M W++RA++ EAA+K K LLG R+G VLAIV+L+LAF+L LGFIG
Sbjct: 342 MGWVNRARRAAEAARKAKELLLGSRRGWLVLAIVVLVLAFVLHHLLGFIG 391
>Os08g0525600 Similar to Peptidylprolyl isomerase
Length = 580
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 77/133 (57%), Gaps = 8/133 (6%)
Query: 97 SGAKMLKQQGNELHRCEQYSEAAAKYKLAKDNLKSIPSQS------AHSLQLVCTLNLMA 150
+GAK K++GN L + +Y A+ +Y+ A ++ S S + L++ C LN A
Sbjct: 406 AGAK--KEEGNALFKLGKYVRASKRYEKAAKFIEYDSSFSEDEKKQSKQLKVTCNLNNAA 463
Query: 151 CYLKTRNFEECINEGSEVLTYDSSNVKAYYRRGQAYKELGNLEAAVGDLSKAHELSPDDE 210
C LK +++++ ++VL DS NVKA YRR QAY +L +LE A D+ KA E+ PD+
Sbjct: 464 CKLKLKDYKQAEKLCTKVLELDSQNVKALYRRAQAYMQLADLELAEVDIKKALEIDPDNR 523
Query: 211 TIAAVLRDAEEKL 223
+ ++ +EK+
Sbjct: 524 DVKLTYKNLKEKV 536
>Os04g0352400 Peptidylprolyl isomerase, FKBP-type domain containing protein
Length = 585
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 75/134 (55%), Gaps = 6/134 (4%)
Query: 96 ISGAKMLKQQGNELHRCEQYSEAAAKYKLAKDNLKSIPS------QSAHSLQLVCTLNLM 149
I A K +GN + +Y++A+ +Y+ A ++ S + + +L++ C LN
Sbjct: 408 IEAAAKKKDEGNVWFKMGKYAKASKRYEKAAKYIEYDSSFTDDEKKQSKALKVSCKLNNA 467
Query: 150 ACYLKTRNFEECINEGSEVLTYDSSNVKAYYRRGQAYKELGNLEAAVGDLSKAHELSPDD 209
AC LK + + E ++VL +S+NVKA YRR QAY EL +LE A D+ KA E+ PD+
Sbjct: 468 ACKLKLKEYREAEKLCTKVLELESTNVKALYRRTQAYIELADLELAELDVKKALEIDPDN 527
Query: 210 ETIAAVLRDAEEKL 223
+ V + +EK+
Sbjct: 528 RDVKMVYKTLKEKI 541
>Os12g0145500 Peptidylprolyl isomerase, FKBP-type domain containing protein
Length = 370
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 97/181 (53%), Gaps = 9/181 (4%)
Query: 66 MLDMAEKLANANPEEVAAMKVQAEQQMSYVISGAKMLKQQGNELHRCEQYSEAAAKYKLA 125
M D+ ++ ++V K +++ + I A K +GNE + +++ EA +Y++A
Sbjct: 153 MADLVYEVELIGFDDVKEGKARSDMTVEERIEAADRRKIEGNEYFKEKKFEEAMQQYEMA 212
Query: 126 -----KDNLKSIPSQS---AHSLQLVCTLNLMACYLKTRNFEECINEGSEVLTYDSSNVK 177
D + + + A +++ C LN+ AC +K + F+E I + + VL+ D +NVK
Sbjct: 213 IAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLKRFDEAIAQCTIVLSEDENNVK 272
Query: 178 AYYRRGQAYKELGNLEAAVGDLSKAHELSPDDETIAAVLRD-AEEKLAVEGKGAKHPKGV 236
A +RRG+A ELG E+A D KA + SP+D+ I LR AE+ A+ K + KG+
Sbjct: 273 ALFRRGKARAELGQTESAREDFLKAKKYSPEDKEIQRELRSLAEQDKALYQKQKELYKGL 332
Query: 237 V 237
Sbjct: 333 F 333
>Os02g0491400 Similar to Peptidylprolyl isomerase
Length = 682
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 6/134 (4%)
Query: 96 ISGAKMLKQQGNELHRCEQYSEAAAKYKLAKDNLKSIPS------QSAHSLQLVCTLNLM 149
I A K +GN + E+Y+ A+ +Y A + ++ S Q + L++ C LN
Sbjct: 453 IEAAAKKKDEGNAWFKMEKYARASKRYGKALNFIQYDSSFSEEEKQLSKPLKVSCKLNNA 512
Query: 150 ACYLKTRNFEECINEGSEVLTYDSSNVKAYYRRGQAYKELGNLEAAVGDLSKAHELSPDD 209
AC LK ++++E +EVL DS NVKA+YRR QA+ L + + A D+ KA E+ PD+
Sbjct: 513 ACKLKLKDYKEAKELCTEVLELDSMNVKAFYRRAQAHMYLVDFDLAELDIKKALEIDPDN 572
Query: 210 ETIAAVLRDAEEKL 223
+ R +EK+
Sbjct: 573 RDVKMGYRRLKEKV 586
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.310 0.124 0.337
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,408,262
Number of extensions: 624587
Number of successful extensions: 1860
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1841
Number of HSP's successfully gapped: 8
Length of query: 547
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 441
Effective length of database: 11,501,117
Effective search space: 5071992597
Effective search space used: 5071992597
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 158 (65.5 bits)