Os12g0145500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidylprolyl isomerase, FKBP-type domain containing protein.
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Os12g0145500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidylprolyl isomerase, FKBP-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.16 | 0.2 | 11.6 | -0.203 | 1.01 | 0.657 | -0.177 | -0.819 | 0.0515 | 20.3 | 21.55 | 167 | -- | -- |
| 18.65 | 0.201 | 11.6 | -0.0551 | 1.01 | 0.586 | -0.185 | -- | 0.0944 | 20.2 | 21.39 | 177 | -- | -- |
| 18.24 | 0.199 | 11.6 | -0.205 | 1 | 0.655 | -- | -0.863 | 0.0499 | 20.3 | 21.54 | 182 | -- | -- |
| 18.74 | 0.202 | 11.6 | -0.0497 | 1.01 | 0.587 | -- | -- | 0.0957 | 20.3 | 21.34 | 167 | -- | -- |
| 49.52 | 0.328 | 11.6 | -0.54 | -- | 1.43 | -- | -2.35 | -0.0322 | -- | 24.12 | 580 | -- | -- |
| 24.52 | 0.232 | 11.6 | 0.0759 | 1.14 | -- | -0.144 | -- | 0.192 | 19.6 | -- | -- | -- | -- |
| 24.58 | 0.232 | 11.6 | 0.0793 | 1.14 | -- | -- | -- | 0.192 | 19.6 | -- | -- | -- | -- |
| 53.55 | 0.341 | 11.6 | -0.168 | -- | 1.18 | -- | -- | 0.0493 | -- | 24.1 | 573 | -- | -- |
| 18.8 | 0.202 | 11.6 | -- | 1.02 | 0.573 | -- | -- | 0.103 | 20.3 | 21.4 | 160 | -- | -- |
| 93.68 | 0.452 | 11.6 | 0.0629 | -- | -- | -- | -- | 0.175 | -- | -- | -- | -- | -- |
| 24.74 | 0.233 | 11.6 | -- | 1.13 | -- | -- | -- | 0.183 | 19.6 | -- | -- | -- | -- |
| 54.27 | 0.343 | 11.6 | -- | -- | 1.16 | -- | -- | 0.07 | -- | 24.1 | 563 | -- | -- |
| 93.79 | 0.452 | 11.6 | -- | -- | -- | -- | -- | 0.168 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.62 | radiation | 10 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 16 | 16.70 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 3 |
| 19 | 16.74 | radiation | 40 | 43200 | > th | dose dependent | rect. | 14 | 22 |
| 20 | 16.76 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 21 | 16.76 | radiation | 40 | 43200 | > th | dose dependent | rect. | 8 | 4 |
| 71 | 16.80 | radiation | 20 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 75 | 16.81 | radiation | 20 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 88 | 16.81 | radiation | 40 | 43200 | > th | dose dependent | sin | 10 | NA |
| 93 | 16.82 | radiation | 40 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 116 | 16.88 | radiation | 20 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 117 | 16.88 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 151 | 16.89 | radiation | 40 | 43200 | < th | dose dependent | rect. | 4 | 4 |
| 185 | 16.92 | radiation | 40 | 43200 | > th | dose dependent | sin | 0 | NA |
| 187 | 16.92 | radiation | 40 | 43200 | > th | dose dependent | no | NA | NA |
| 332 | 16.92 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 23 |
| 371 | 16.94 | radiation | 20 | 43200 | < th | dose independent | sin | 10 | NA |
| 408 | 16.95 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 19 |
| 465 | 16.96 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 21 |
| 537 | 17.00 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 3 |
| 585 | 17.02 | radiation | 40 | 43200 | < th | dose independent | sin | 9 | NA |
| 610 | 17.03 | radiation | 20 | 43200 | < th | dose independent | rect. | 14 | 19 |
| 617 | 17.04 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 633 | 17.04 | radiation | 40 | 43200 | < th | dose independent | rect. | 23 | 11 |
| 671 | 17.05 | radiation | 20 | 43200 | < th | dose independent | rect. | 16 | 20 |
| 700 | 17.06 | radiation | 40 | 43200 | < th | dose independent | rect. | 11 | 22 |
| 729 | 17.07 | radiation | 40 | 43200 | < th | dose independent | no | NA | NA |
| 735 | 17.07 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 10 |
| 752 | 17.07 | radiation | 40 | 43200 | < th | dose independent | rect. | 2 | 15 |
| 803 | 17.07 | radiation | 40 | 43200 | < th | dose independent | rect. | 19 | 22 |
| 852 | 17.08 | radiation | 40 | 43200 | < th | dose independent | sin | 14 | NA |
| 855 | 17.08 | radiation | 40 | 43200 | < th | dose independent | sin | 4 | NA |
| 942 | 17.09 | radiation | 40 | 43200 | < th | dose independent | sin | 2 | NA |
| 968 | 17.10 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |