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Os07g0161000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0136) R2 : 0.493
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.61 (0.0348) R2dC : 0.341 R2C : 0.312
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.323 (0.0287) R2dN8 : 0.182 R2N8 : 0.152
σ : 0.257
deviance : 30.21
__
_____
C
peak time of C : 4.01
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
20.53 0.213 11 -0.736 0.618 0.359 0.089 -0.578 0.155 4.06 20.02 1927 -- --
20.28 0.21 11 -0.661 0.607 0.522 0.128 -- 0.197 4.04 18.4 2770 -- --
20.55 0.211 11 -0.736 0.618 0.359 -- -0.582 0.155 4.06 20.04 1920 -- --
20.2 0.209 11 -0.72 0.591 0.601 -- -- 0.164 3.98 18.4 2784 -- --
39.51 0.293 11 -0.723 -- 0.495 -- -0.274 0.142 -- 19.7 2581 -- --
25.04 0.235 11 -0.441 0.618 -- 0.0693 -- 0.274 4 -- -- -- --
25.05 0.234 11 -0.442 0.619 -- -- -- 0.273 4 -- -- -- --
38.76 0.29 11 -0.73 -- 0.74 -- -- 0.151 -- 18.3 2652 -- --
29.68 0.254 11 -- 0.58 0.271 -- -- 0.305 3.94 17.8 2697 -- --
45.95 0.317 11 -0.417 -- -- -- -- 0.29 -- -- -- -- --
30.21 0.257 11 -- 0.61 -- -- -- 0.323 4.01 -- -- -- --
48.63 0.325 11 -- -- 0.367 -- -- 0.308 -- 17.8 2550 -- --
50.53 0.332 11 -- -- -- -- -- 0.336 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 19.66 humidity 90 4320 > th dose dependent rect. 7 2
5 20.03 temperature 20 14400 < th dose independent rect. 20 1
7 20.20 humidity 90 4320 > th dose dependent rect. 7 7
8 20.23 temperature 20 14400 > th dose independent rect. 20 1
9 20.25 temperature 20 1440 > th dose independent rect. 6 1
10 20.26 humidity 90 14400 > th dose independent rect. 13 1
11 20.26 wind 1 14400 > th dose independent rect. 24 2
16 20.35 temperature 20 1440 < th dose independent rect. 20 7
18 20.36 radiation 1 4320 < th dose dependent rect. 7 1
21 20.37 temperature 20 1440 > th dose independent rect. 20 7
27 20.40 temperature 20 1440 > th dose independent rect. 22 18
28 20.40 temperature 20 1440 < th dose independent rect. 22 18
29 20.41 temperature 20 1440 < th dose independent rect. 5 2
45 20.42 wind 5 43200 < th dose dependent rect. 1 1
61 20.45 temperature 20 1440 > th dose independent rect. 12 19
62 20.45 temperature 20 1440 < th dose independent rect. 12 19
71 20.46 radiation 20 1440 < th dose dependent rect. 11 1
72 20.47 temperature 20 1440 < th dose independent sin 12 NA
85 20.48 temperature 20 1440 < th dose independent sin 7 NA
87 20.48 temperature 20 1440 < th dose independent sin 10 NA
92 20.48 temperature 20 1440 > th dose independent rect. 15 13
93 20.48 temperature 20 1440 < th dose independent rect. 15 13
101 20.49 temperature 20 1440 > th dose independent sin 7 NA
102 20.49 temperature 20 1440 > th dose independent sin 11 NA
107 20.49 wind 1 14400 < th dose independent rect. 24 2
109 20.49 humidity 90 4320 > th dose independent rect. 7 4
114 20.49 temperature 20 1440 < th dose independent rect. 22 12
123 20.49 temperature 20 1440 < th dose independent rect. 12 16
133 20.49 temperature 20 1440 < th dose dependent rect. 2 1
138 20.50 radiation 1 4320 < th dose independent rect. 7 1
163 20.51 radiation 1 4320 > th dose independent rect. 7 1
172 20.51 temperature 20 1440 > th dose independent rect. 22 12
212 20.53 temperature 20 1440 < th dose independent rect. 23 2
236 20.54 wind 9 14400 > th dose independent rect. 6 5
256 20.55 temperature 20 1440 > th dose independent rect. 23 2
325 20.58 temperature 20 1440 > th dose independent rect. 3 1
351 20.58 humidity 90 14400 > th dose dependent rect. 15 2
369 20.59 humidity 80 4320 > th dose dependent rect. 10 1
449 20.63 temperature 20 1440 > th dose independent rect. 5 23
454 20.64 temperature 20 1440 < th dose independent rect. 3 1
494 20.65 temperature 20 1440 < th dose independent rect. 5 23
498 20.66 temperature 20 1440 > th dose independent no NA NA
511 20.66 temperature 20 1440 > th dose independent rect. 15 23
517 20.67 temperature 20 1440 < th dose independent no NA NA
533 20.67 humidity 90 14400 > th dose dependent rect. 13 4
535 20.68 wind 3 43200 < th dose independent rect. 6 1
555 20.68 wind 1 43200 > th dose dependent rect. 1 1
557 20.68 humidity 80 14400 > th dose dependent rect. 10 5
589 20.72 wind 3 43200 > th dose independent rect. 6 1
601 20.72 humidity 80 14400 > th dose dependent rect. 12 2
605 20.73 humidity 90 4320 < th dose independent rect. 7 4
608 20.73 humidity 90 4320 > th dose independent rect. 7 7
632 20.74 wind 3 43200 < th dose dependent rect. 6 1
644 20.75 humidity 90 14400 > th dose dependent rect. 12 7
646 20.76 wind 9 14400 < th dose independent rect. 6 5
661 20.77 wind 9 14400 < th dose independent rect. 9 2
694 20.79 temperature 25 14400 < th dose independent rect. 15 1
695 20.79 humidity 90 14400 > th dose independent rect. 16 1
705 20.80 wind 9 14400 > th dose independent rect. 9 2
713 20.81 temperature 25 14400 > th dose independent rect. 14 1
714 20.81 humidity 90 14400 > th dose independent rect. 9 1
722 20.81 humidity 90 14400 > th dose dependent rect. 7 12
727 20.82 temperature 25 14400 < th dose independent rect. 13 3
764 20.84 wind 9 43200 > th dose independent rect. 9 5
767 20.84 temperature 25 14400 < th dose independent rect. 11 5
788 20.85 wind 9 43200 > th dose dependent rect. 10 4
827 20.88 humidity 90 14400 > th dose independent rect. 16 3
833 20.88 humidity 90 14400 > th dose independent rect. 7 12
834 20.88 humidity 90 14400 > th dose independent rect. 7 15
869 20.90 humidity 90 14400 > th dose independent rect. 12 10
871 20.90 wind 3 1440 < th dose dependent rect. 6 1
876 20.90 wind 9 43200 > th dose dependent rect. 10 6
888 20.91 wind 9 43200 > th dose independent rect. 4 10
931 20.93 humidity 90 14400 > th dose independent rect. 9 13
943 20.94 temperature 25 14400 < th dose independent rect. 11 1
963 20.94 temperature 25 14400 < th dose dependent rect. 9 1
964 20.94 wind 1 43200 > th dose dependent rect. 5 2
977 20.95 humidity 90 14400 > th dose independent rect. 15 7
996 20.96 wind 9 43200 < th dose independent rect. 9 5