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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0437500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.9 (0.0639) R2 : 0.498
β1 : 1.98 (0.246) R2dD : 0.0807 R2D : -0.0195
β2 : 2.82 (0.164) R2dC : 0.326 R2C : 0.279
β3 : -4.09 (0.312) R2dE : 0.22 R2E : 0.0864
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.253 (0.137) R2dN8 : 0.0051 R2N8 : 0.00636
σ : 1.19
deviance : 654.3
__
_____
C
peak time of C : 7.56
E
wheather : humidity
threshold : 79.73
memory length : 1591
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 20.5
open length of G : 13.8

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
656.85 1.2 4.9 1.91 2.8 -3.72 0.626 -0.168 0.262 7.55 79.47 1583 20.1 14.4
655.76 1.19 4.9 1.93 2.79 -3.83 0.769 -- 0.327 7.59 79.97 1578 20.4 14.2
656.03 1.19 4.9 1.89 2.78 -3.84 -- 0.446 0.248 7.58 79.59 1584 20.3 14.1
654.3 1.19 4.9 1.98 2.82 -4.09 -- -- 0.253 7.56 79.73 1591 20.5 13.8
762.79 1.29 4.95 1.47 -- -4.75 -- -1.03 0.46 -- 89.98 1001 23.1 14.7
902 1.41 4.85 0.937 2.61 -- 0.404 -- 0.458 7.44 -- -- -- --
902.45 1.41 4.86 0.946 2.61 -- -- -- 0.457 7.44 -- -- -- --
763.79 1.29 4.95 1.46 -- -4.76 -- -- 0.459 -- 90 1001 23.1 14.7
716.26 1.25 4.88 -- 2.2 -3.77 -- -- 0.344 7.75 87.78 1102 19.1 16
1266.09 1.66 4.92 0.988 -- -- -- -- 0.499 -- -- -- -- --
926.05 1.42 4.88 -- 2.62 -- -- -- 0.352 7.42 -- -- -- --
816.68 1.33 4.94 -- -- -4.56 -- -- 0.387 -- 92 997 23.3 14.6
1291.82 1.68 4.94 -- -- -- -- -- 0.389 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 678.56 humidity 80 1440 < th dose dependent rect. 20 15
10 691.21 humidity 70 1440 > th dose independent rect. 10 2
24 694.45 humidity 80 1440 < th dose dependent sin 8 NA
27 695.08 humidity 70 1440 < th dose independent rect. 10 2
32 696.68 humidity 80 1440 > th dose independent rect. 24 14
42 698.52 humidity 80 1440 < th dose independent rect. 24 14
44 698.90 humidity 80 720 < th dose independent rect. 15 19
47 699.19 humidity 70 1440 > th dose independent rect. 4 9
54 699.43 humidity 80 1440 > th dose independent rect. 2 8
56 699.45 humidity 70 1440 > th dose independent rect. 22 15
72 700.47 humidity 80 1440 > th dose independent sin 5 NA
76 700.54 humidity 80 720 > th dose independent rect. 3 19
81 700.92 humidity 80 1440 < th dose independent sin 5 NA
100 702.12 humidity 70 1440 < th dose independent rect. 6 6
120 702.61 humidity 70 720 > th dose dependent rect. 3 20
212 707.41 humidity 50 1440 > th dose dependent rect. 2 10
294 711.15 humidity 70 720 > th dose dependent rect. 7 23
301 711.30 humidity 80 720 > th dose independent rect. 23 23
325 712.50 humidity 80 720 > th dose independent rect. 15 23
341 712.95 humidity 80 720 > th dose independent rect. 8 23
357 713.82 humidity 80 720 < th dose independent rect. 23 23
376 714.37 humidity 80 720 < th dose independent rect. 11 23
377 714.55 humidity 80 720 < th dose independent rect. 20 23
383 714.73 humidity 80 720 > th dose independent rect. 10 23
387 714.83 humidity 80 720 > th dose independent no NA NA
409 715.51 humidity 80 720 < th dose independent rect. 4 23
417 715.58 humidity 50 1440 > th dose dependent sin 6 NA
422 715.80 humidity 80 720 < th dose independent no NA NA
433 715.99 humidity 70 720 > th dose dependent rect. 15 23
478 717.33 humidity 70 720 > th dose dependent no NA NA
772 724.99 humidity 80 720 > th dose independent rect. 21 23
1000 730.33 humidity 50 720 > th dose dependent rect. 18 15