BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0437500 Os04g0437500|AK110861
(392 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G21990.1 | chr5:7273395-7276318 FORWARD LENGTH=555 184 6e-47
AT5G48570.1 | chr5:19690746-19693656 REVERSE LENGTH=579 62 7e-10
AT1G58450.1 | chr1:21718014-21718916 FORWARD LENGTH=165 61 1e-09
AT3G25230.2 | chr3:9188257-9191175 FORWARD LENGTH=563 59 4e-09
AT4G30480.2 | chr4:14897500-14898937 FORWARD LENGTH=278 57 2e-08
AT3G21640.1 | chr3:7619025-7621097 REVERSE LENGTH=366 55 6e-08
>AT5G21990.1 | chr5:7273395-7276318 FORWARD LENGTH=555
Length = 554
Score = 184 bits (468), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 139/229 (60%), Gaps = 5/229 (2%)
Query: 1 MMDPEMMRVAQEXXXXXXXXXXXXXXXXXXSNPSLLRFATEGIKTLTPDDLRRAGEQMSR 60
+MDPEM+R+AQ+ SNP L+ ATE +K + P+DL++A EQ+
Sbjct: 5 LMDPEMIRLAQDQMSRMTPADFARIQQQMMSNPDLMNMATESMKNMRPEDLKQAAEQLKH 64
Query: 61 TSAEEVLGMSRRLAAASPEELAATMKNAQAEQQRASSYAAVSGARALKDQGNXXXXXXXX 120
T E++ +S ++A ASPE++AA +A A+ +Y ++ A+ LK QGN
Sbjct: 65 TRPEDMAEISEKMAKASPEDIAAMRAHADAQ----FTYQ-INAAQMLKKQGNELHSRGNF 119
Query: 121 XXXXXXXXXXVDNLRSVPSSASRSLRAVCGVNLMACHLKTGRLAECVELGSEVLGLDPGN 180
+NL+ +PSS ++ C +NLM+C+LKT + EC++ GSEVLG D N
Sbjct: 120 SDAAEKYLRAKNNLKEIPSSKGGAILLACSLNLMSCYLKTNQHEECIKEGSEVLGYDARN 179
Query: 181 VKAHYRRGQAYRELGRMEAAVADLRRAHELSPEEDAIADALRDAEEKLG 229
VKA YRRGQAYR+LG E AV+DL +AHE+SPE++ IAD LRD +E+L
Sbjct: 180 VKALYRRGQAYRDLGLFEDAVSDLSKAHEVSPEDETIADVLRDVKERLA 228
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 48/66 (72%)
Query: 281 EMMNSMGDPAMGKMVASVVQGMDPETVSIIGKQFGVDLSRDDAARLQDAMKKLSPENLEK 340
+M N M DPAM +M S+++ M+PE ++ + +QFG+ LS++DAA+ Q AM LSP+ LEK
Sbjct: 446 QMRNQMKDPAMRQMFTSMIKNMNPEMMASMSEQFGMKLSQEDAAKAQQAMASLSPDALEK 505
Query: 341 VMGWVN 346
+M W +
Sbjct: 506 MMRWAD 511
>AT5G48570.1 | chr5:19690746-19693656 REVERSE LENGTH=579
Length = 578
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%)
Query: 142 SRSLRAVCGVNLMACHLKTGRLAECVELGSEVLGLDPGNVKAHYRRGQAYRELGRMEAAV 201
S+ L+ C +N AC LK E +L ++VL +D NVKA YRR AY E ++ A
Sbjct: 454 SKDLKIACNLNDAACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAE 513
Query: 202 ADLRRAHELSPEEDAIADALRDAEEKL 228
D+++A E+ P+ + + +EK+
Sbjct: 514 LDIKKALEIDPDNKEVKIEYKKLKEKV 540
>AT1G58450.1 | chr1:21718014-21718916 FORWARD LENGTH=165
Length = 164
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 43/71 (60%)
Query: 143 RSLRAVCGVNLMACHLKTGRLAECVELGSEVLGLDPGNVKAHYRRGQAYRELGRMEAAVA 202
++LR C +N AC LK E + L SEVL ++ NVKA YRR Q+Y E+G + +A
Sbjct: 54 KALRVSCFLNGAACSLKLKNFLETIVLCSEVLDIEFQNVKALYRRAQSYIEVGDLISAEM 113
Query: 203 DLRRAHELSPE 213
D+ RA E PE
Sbjct: 114 DINRALEADPE 124
>AT3G25230.2 | chr3:9188257-9191175 FORWARD LENGTH=563
Length = 562
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 44/71 (61%)
Query: 142 SRSLRAVCGVNLMACHLKTGRLAECVELGSEVLGLDPGNVKAHYRRGQAYRELGRMEAAV 201
+++L+ C +N AC LK + +L ++VL L+ NVKA YRR QAY EL ++ A
Sbjct: 444 AKALKVACNLNDAACKLKLKDYKQAEKLCTKVLELESTNVKALYRRAQAYMELSDLDLAE 503
Query: 202 ADLRRAHELSP 212
D+++A E+ P
Sbjct: 504 FDVKKALEIDP 514
>AT4G30480.2 | chr4:14897500-14898937 FORWARD LENGTH=278
Length = 277
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 142 SRSLRAVCGVNLMACHLKTGRLAECVELGSEVLGLDPGNVKAHYRRGQAYRELGRMEAAV 201
S LR++C +N C LK G+ E ++ ++ L L+P KA RR +A+ +L E AV
Sbjct: 141 SIELRSICYLNRGVCFLKLGKCEETIKECTKALELNPTYNKALVRRAEAHEKLEHFEDAV 200
Query: 202 ADLRRAHELSPEEDAIADALR 222
DL++ EL P D +R
Sbjct: 201 TDLKKILELDPSNDQARKGIR 221
>AT3G21640.1 | chr3:7619025-7621097 REVERSE LENGTH=366
Length = 365
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%)
Query: 149 CGVNLMACHLKTGRLAECVELGSEVLGLDPGNVKAHYRRGQAYRELGRMEAAVADLRRAH 208
C +N+ AC +K R E + + VL + N KA +RRG+A ELG+M++A D R+A
Sbjct: 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291
Query: 209 ELSPEEDAIADALR 222
+ +P++ AI LR
Sbjct: 292 KYAPDDKAIRRELR 305
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.129 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,289,902
Number of extensions: 166031
Number of successful extensions: 625
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 621
Number of HSP's successfully gapped: 8
Length of query: 392
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 291
Effective length of database: 8,337,553
Effective search space: 2426227923
Effective search space used: 2426227923
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 113 (48.1 bits)