BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0437500 Os04g0437500|AK110861
         (392 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0437500  Tetratricopeptide-like helical domain containi...   532   e-151
Os07g0161000  Tetratricopeptide-like helical domain containi...   218   9e-57

>Os04g0437500 Tetratricopeptide-like helical domain containing protein
          Length = 392

 Score =  532 bits (1370), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 285/392 (72%), Positives = 285/392 (72%)

Query: 1   MMDPEMMRVAQEXXXXXXXXXXXXXXXXXXSNPSLLRFATEGIKTLTPDDLRRAGEQMSR 60
           MMDPEMMRVAQE                  SNPSLLRFATEGIKTLTPDDLRRAGEQMSR
Sbjct: 1   MMDPEMMRVAQEQMRRMPPAALAAMQQQLMSNPSLLRFATEGIKTLTPDDLRRAGEQMSR 60

Query: 61  TSAEEVLGMSRRLAAASPEELAATMKNAQAEQQRASSYAAVSGARALKDQGNXXXXXXXX 120
           TSAEEVLGMSRRLAAASPEELAATMKNAQAEQQRASSYAAVSGARALKDQGN        
Sbjct: 61  TSAEEVLGMSRRLAAASPEELAATMKNAQAEQQRASSYAAVSGARALKDQGNALFRLARH 120

Query: 121 XXXXXXXXXXVDNLRSVPSSASRSLRAVCGVNLMACHLKTGRLAECVELGSEVLGLDPGN 180
                     VDNLRSVPSSASRSLRAVCGVNLMACHLKTGRLAECVELGSEVLGLDPGN
Sbjct: 121 ADAAAKYALAVDNLRSVPSSASRSLRAVCGVNLMACHLKTGRLAECVELGSEVLGLDPGN 180

Query: 181 VKAHYRRGQAYRELGRMEAAVADLRRAHELSPEEDAIADALRDAEEKLGAPRGLXXXXXX 240
           VKAHYRRGQAYRELGRMEAAVADLRRAHELSPEEDAIADALRDAEEKLGAPRGL      
Sbjct: 181 VKAHYRRGQAYRELGRMEAAVADLRRAHELSPEEDAIADALRDAEEKLGAPRGLVIEEIV 240

Query: 241 XXXXXAQGSEILXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMMNSMGDPAMGKMVASVVQ 300
                AQGSEIL                            EMMNSMGDPAMGKMVASVVQ
Sbjct: 241 EEEEEAQGSEILPTSGATSSSTSGHSVPSPSPSPSAAAAAEMMNSMGDPAMGKMVASVVQ 300

Query: 301 GMDPETVSIIGKQFGVDLSRDDAARLQDAMKKLSPENLEKVMGWVNXXXXXXXXXXXXXX 360
           GMDPETVSIIGKQFGVDLSRDDAARLQDAMKKLSPENLEKVMGWVN              
Sbjct: 301 GMDPETVSIIGKQFGVDLSRDDAARLQDAMKKLSPENLEKVMGWVNRARRAAEAARKAKE 360

Query: 361 LLLGSRRGWXXXXXXXXXXXXXXXXXXGFIGA 392
           LLLGSRRGW                  GFIGA
Sbjct: 361 LLLGSRRGWLVLAIVVLVLAFVLHHLLGFIGA 392



>Os07g0161000 Tetratricopeptide-like helical domain containing protein
          Length = 547

 Score =  218 bits (554), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 116/229 (50%), Positives = 149/229 (65%), Gaps = 5/229 (2%)

Query: 1   MMDPEMMRVAQEXXXXXXXXXXXXXXXXXXSNPSLLRFATEGIKTLTPDDLRRAGEQMSR 60
           MMDPEMMR+AQE                  SNP+L++ A+E +K +  DD RRA +QM++
Sbjct: 1   MMDPEMMRLAQEQMSKMSPADLARMQQQLLSNPNLVKLASESMKNMRADDFRRAAQQMNQ 60

Query: 61  TSAEEVLGMSRRLAAASPEELAATMKNAQAEQQRASSYAAVSGARALKDQGNXXXXXXXX 120
           T  +E+L M+ +LA A+PEE+AA MK  QAEQQ   SY  +SGA+ LK QGN        
Sbjct: 61  TRPDEMLDMAEKLANANPEEVAA-MK-VQAEQQM--SYV-ISGAKMLKQQGNELHRCEQY 115

Query: 121 XXXXXXXXXXVDNLRSVPSSASRSLRAVCGVNLMACHLKTGRLAECVELGSEVLGLDPGN 180
                      DNL+S+PS ++ SL+ VC +NLMAC+LKT    EC+  GSEVL  D  N
Sbjct: 116 SEAAAKYKLAKDNLKSIPSQSAHSLQLVCTLNLMACYLKTRNFEECINEGSEVLTYDSSN 175

Query: 181 VKAHYRRGQAYRELGRMEAAVADLRRAHELSPEEDAIADALRDAEEKLG 229
           VKA+YRRGQAY+ELG +EAAV DL +AHELSP+++ IA  LRDAEEKL 
Sbjct: 176 VKAYYRRGQAYKELGNLEAAVGDLSKAHELSPDDETIAAVLRDAEEKLA 224




 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 56/87 (64%), Gaps = 1/87 (1%)

Query: 282 MMNSMGDPAMGKMVASVVQGMDPETVSIIGKQFGVDLSRDDAARLQDAMKKLSPENLEKV 341
           M N+M DPAM KM AS+++ + PE +S + +QFG+ ++++DAA+ Q+A+  LSPE L+++
Sbjct: 440 MRNAMKDPAMRKMYASMMKNISPEMMSSMSEQFGMKMTKEDAAKAQEALSSLSPEALDRM 499

Query: 342 MGWVNXXXXXXXXXXXXXXLLLGSRRG 368
           M W++               LLG R+G
Sbjct: 500 MKWMDRAQQGVEAAKKTKNWLLG-RKG 525



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.129    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,678,569
Number of extensions: 289394
Number of successful extensions: 1260
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1253
Number of HSP's successfully gapped: 3
Length of query: 392
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 289
Effective length of database: 11,657,759
Effective search space: 3369092351
Effective search space used: 3369092351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 157 (65.1 bits)