BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0696500 Os06g0696500|J080303G16
(190 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0696500 Similar to Xyloglycan endo-transglycosylase pr... 345 8e-96
Os06g0696400 Similar to Xyloglucan endotransglucosylase/hyd... 79 2e-15
Os06g0696600 Similar to Xyloglucan endo-transglycosylase ho... 78 4e-15
Os06g0697000 Similar to Xyloglucan endotransglycosylase (Fr... 75 2e-14
Os11g0539200 Similar to Xyloglucan endotransglycosylase XET... 70 8e-13
Os04g0604900 Similar to Xyloglucan endotransglycosylase (Fr... 70 1e-12
>Os06g0696500 Similar to Xyloglycan endo-transglycosylase precursor
Length = 190
Score = 345 bits (886), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 173/190 (91%), Positives = 173/190 (91%)
Query: 1 MRGGASLRLRWPXXXXXXXXXXXXXXXXXGHGDHNFHRDFDAVWGKGNARFRDGGRMVEL 60
MRGGASLRLRWP GHGDHNFHRDFDAVWGKGNARFRDGGRMVEL
Sbjct: 1 MRGGASLRLRWPAALVAVVAAAVTAAAAAGHGDHNFHRDFDAVWGKGNARFRDGGRMVEL 60
Query: 61 TLDEQTGARLQSKERFLFGRFDLEIKLVRGESAGTITSFYVSWGSLLIDLGLICSIFPPS 120
TLDEQTGARLQSKERFLFGRFDLEIKLVRGESAGTITSFYVSWGSLLIDLGLICSIFPPS
Sbjct: 61 TLDEQTGARLQSKERFLFGRFDLEIKLVRGESAGTITSFYVSWGSLLIDLGLICSIFPPS 120
Query: 121 LCEILRIVHPVKVARIVSSRRQRNTRGIPRVDTCHSWDELYFMGQKIIRRRLSSQINKFG 180
LCEILRIVHPVKVARIVSSRRQRNTRGIPRVDTCHSWDELYFMGQKIIRRRLSSQINKFG
Sbjct: 121 LCEILRIVHPVKVARIVSSRRQRNTRGIPRVDTCHSWDELYFMGQKIIRRRLSSQINKFG 180
Query: 181 PRLADGMVER 190
PRLADGMVER
Sbjct: 181 PRLADGMVER 190
>Os06g0696400 Similar to Xyloglucan endotransglucosylase/hydrolase protein 24
precursor (EC 2.4.1.207) (At-XTH24) (XTH-24) (Meristem
protein 5) (MERI-5 protein) (MERI5 protein)
(Endo-xyloglucan transferase) (Xyloglucan
endo-1,4-beta-D-glucanase)
Length = 259
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 50/68 (73%)
Query: 35 NFHRDFDAVWGKGNARFRDGGRMVELTLDEQTGARLQSKERFLFGRFDLEIKLVRGESAG 94
NF +D + WG+G + DGGR ++LTLD +G+ QSK +LFG+ D++IKLV G SAG
Sbjct: 12 NFFQDAEVSWGQGRGKIVDGGRGLDLTLDRSSGSGFQSKSEYLFGKIDMQIKLVPGNSAG 71
Query: 95 TITSFYVS 102
T+T+FY+S
Sbjct: 72 TVTTFYLS 79
>Os06g0696600 Similar to Xyloglucan endo-transglycosylase homolog
Length = 288
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 49/68 (72%)
Query: 35 NFHRDFDAVWGKGNARFRDGGRMVELTLDEQTGARLQSKERFLFGRFDLEIKLVRGESAG 94
NF++D D WG G + G+++ L+LD +G+ QSK ++L+GRFD++IKLV G SAG
Sbjct: 31 NFYQDVDITWGDGRGKILGNGQLLTLSLDRSSGSGFQSKNQYLYGRFDMQIKLVPGNSAG 90
Query: 95 TITSFYVS 102
T+ +FY+S
Sbjct: 91 TVATFYLS 98
>Os06g0697000 Similar to Xyloglucan endotransglycosylase (Fragment)
Length = 310
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 50/68 (73%)
Query: 35 NFHRDFDAVWGKGNARFRDGGRMVELTLDEQTGARLQSKERFLFGRFDLEIKLVRGESAG 94
NF+++FD WG G + + G+++ LTLD +G+ QSK +L+G+ D+++KLV G SAG
Sbjct: 40 NFNQEFDITWGDGRGKILEDGQLLTLTLDRTSGSGFQSKHEYLYGKIDMQLKLVPGNSAG 99
Query: 95 TITSFYVS 102
T+T++Y+S
Sbjct: 100 TVTAYYLS 107
>Os11g0539200 Similar to Xyloglucan endotransglycosylase XET2 (Fragment)
Length = 295
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 33 DHNFHRDFDAVWGKGNARFRDGGRMVELTLDEQTGARLQSKERFLFGRFDLEIKLVRGES 92
D F +++ W + + + DGGR V+L LD+ TG Q++ +LFG F + IKLV G+S
Sbjct: 31 DVAFEKNYVPTWAEDHIHYVDGGREVQLYLDKSTGTGFQTRGSYLFGHFSMHIKLVAGDS 90
Query: 93 AGTITSFYVS 102
AGT+T+FY+S
Sbjct: 91 AGTVTAFYLS 100
>Os04g0604900 Similar to Xyloglucan endotransglycosylase (Fragment)
Length = 321
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 5/72 (6%)
Query: 36 FHRDFDAVWGKGNARFRDGG-----RMVELTLDEQTGARLQSKERFLFGRFDLEIKLVRG 90
F +FD +WG+ + R D ++V LTLD+ +G+ QSK++FLFG F +E+KLV G
Sbjct: 36 FREEFDVIWGEDHVRVTDEDDAATRQVVALTLDQASGSGFQSKDQFLFGEFSMEMKLVPG 95
Query: 91 ESAGTITSFYVS 102
ES GT+ +FY++
Sbjct: 96 ESPGTVATFYLT 107
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.327 0.143 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,373,373
Number of extensions: 243868
Number of successful extensions: 608
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 609
Number of HSP's successfully gapped: 6
Length of query: 190
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 95
Effective length of database: 12,075,471
Effective search space: 1147169745
Effective search space used: 1147169745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 153 (63.5 bits)