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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0697000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Xyloglucan endotransglycosylase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.91 (0.113) R2 : 0.603
β1 : -10.6 (0.438) R2dD : 0.682 R2D : 0.384
β2 : 0.699 (0.271) R2dC : 0.00584 R2C : -0.0501
β3 : -1.89 (0.471) R2dE : 0.0282 R2E : -0.123
β4 : -2.84 (1.19) R2dD*C : 0.00502 R2D*C : -0.0514
β5 : 16.2 (2.81) R2dD*E : 0.0639 R2D*E : -0.14
γ1 : -2.68 (0.232) R2dN8 : 0.164 R2N8 : -0.000985
σ : 2
deviance : 1804.23
__
_____
C
peak time of C : 16.2
E
wheather : atmosphere
threshold : 1000
memory length : 20
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 9.51
open length of G : 23

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1804.23 2 6.91 -10.6 0.699 -1.89 -2.84 16.2 -2.68 16.2 1000 20 9.51 23
1865.1 2.03 6.73 -9.49 0.7 -3.05 -2.92 -- -2.62 15.9 982.5 18 9 24
1823.27 1.99 6.9 -10.6 0.701 -1.8 -- 15.8 -2.67 14.8 1000 19 9.46 23.1
1887.06 2.04 6.74 -9.53 0.699 -2.9 -- -- -2.62 14.6 982.5 18 9 24
1851.56 2 6.9 -10.7 -- -1.82 -- 15.6 -2.7 -- 1000 16 9.53 23
1931.07 2.06 6.68 -9.48 0.723 -- -2.41 -- -2.38 14.9 -- -- -- --
1947.22 2.07 6.68 -9.53 0.733 -- -- -- -2.4 13.6 -- -- -- --
1915.6 2.05 6.74 -9.56 -- -2.95 -- -- -2.64 -- 982.5 18 9 24
4281.84 3.06 6.5 -- 0.885 -2.93 -- -- -1.56 14.8 982.5 18 9 24
1980.07 2.08 6.69 -9.56 -- -- -- -- -2.42 -- -- -- -- --
4343.31 3.08 6.44 -- 0.908 -- -- -- -1.34 13.9 -- -- -- --
4327.35 3.07 6.5 -- -- -2.98 -- -- -1.59 -- 982.5 18 9 24
4393.05 3.09 6.45 -- -- -- -- -- -1.36 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1817.37 atmosphere 1000.0 30 > th dose independent rect. 9 23
3 1833.81 wind 9.0 14400 < th dose independent rect. 9 1
4 1835.65 wind 9.0 30 < th dose independent rect. 9 23
6 1838.76 wind 1.0 14400 < th dose dependent rect. 2 2
7 1839.39 radiation 20.0 10 < th dose independent rect. 8 12
8 1842.36 atmosphere 1005.0 30 > th dose independent rect. 8 1
10 1842.81 atmosphere 1005.0 10 > th dose dependent rect. 8 1
12 1843.54 wind 3.0 30 > th dose independent rect. 8 1
13 1843.71 temperature 10.0 1440 > th dose independent rect. 9 1
16 1843.71 atmosphere 995.0 1440 > th dose independent rect. 9 1
19 1843.71 atmosphere 1015.0 1440 < th dose independent rect. 9 1
20 1843.71 temperature 10.0 1440 > th dose independent rect. 10 23
24 1844.78 radiation 20.0 90 < th dose independent rect. 8 1
26 1844.82 wind 1.0 30 > th dose dependent rect. 8 1
28 1845.08 humidity 90.0 30 < th dose dependent rect. 8 1
29 1845.12 humidity 90.0 14400 < th dose independent rect. 2 5
30 1845.13 temperature 20.0 30 > th dose dependent rect. 8 1
32 1845.35 humidity 80.0 30 < th dose independent rect. 8 1
38 1846.21 atmosphere 1005.0 30 > th dose dependent rect. 24 9
39 1846.22 temperature 25.0 30 > th dose independent rect. 8 1
41 1846.40 radiation 10.0 30 > th dose independent rect. 8 1
44 1846.85 wind 7.0 30 < th dose independent rect. 8 1
46 1846.85 temperature 10.0 30 > th dose independent rect. 8 1
48 1846.85 temperature 30.0 30 < th dose independent rect. 8 1
49 1846.85 humidity 50.0 30 > th dose independent rect. 8 1
51 1846.85 atmosphere 995.0 30 > th dose independent rect. 8 1
52 1846.85 atmosphere 1010.0 30 < th dose independent rect. 8 1
55 1846.85 precipitation 0.1 30 < th dose independent rect. 8 1
56 1846.85 temperature 10.0 30 > th dose independent rect. 9 23
57 1846.85 precipitation 0.1 30 < th dose dependent rect. 8 1
59 1847.01 radiation 10.0 30 > th dose dependent rect. 8 1
61 1847.11 radiation 40.0 30 < th dose dependent rect. 8 1
68 1847.37 radiation 1.0 4320 < th dose independent rect. 2 4
70 1847.41 radiation 30.0 90 < th dose dependent rect. 8 11
71 1847.46 radiation 1.0 4320 < th dose independent rect. 21 9
72 1847.57 wind 9.0 30 < th dose dependent rect. 8 1
74 1847.68 radiation 1.0 4320 < th dose independent rect. 24 6
76 1847.71 radiation 1.0 4320 < th dose independent rect. 4 2
84 1848.37 humidity 50.0 30 > th dose dependent rect. 8 1
90 1848.82 radiation 1.0 4320 > th dose independent rect. 4 2
100 1849.20 humidity 90.0 14400 < th dose independent rect. 3 3
103 1849.57 wind 9.0 720 < th dose independent rect. 9 8
111 1850.38 humidity 80.0 14400 > th dose independent rect. 23 2
116 1851.11 atmosphere 1015.0 30 < th dose dependent rect. 8 1
117 1851.17 radiation 30.0 10 < th dose dependent rect. 8 12
120 1851.55 humidity 70.0 720 > th dose independent rect. 18 12
122 1851.78 humidity 70.0 720 > th dose independent rect. 19 2
125 1852.13 humidity 90.0 4320 < th dose independent rect. 24 2
126 1852.19 precipitation 0.1 30 < th dose independent rect. 9 23
127 1852.19 precipitation 0.1 30 < th dose dependent rect. 9 23
129 1852.26 humidity 90.0 4320 < th dose independent rect. 24 4
132 1852.29 temperature 25.0 720 > th dose dependent rect. 21 1
135 1852.59 temperature 25.0 10 > th dose dependent rect. 10 8
136 1852.79 atmosphere 1005.0 90 > th dose independent rect. 2 7
141 1853.51 wind 9.0 30 < th dose dependent rect. 9 23
143 1853.61 temperature 25.0 720 > th dose independent rect. 21 1
144 1853.75 temperature 20.0 90 > th dose dependent rect. 9 8
145 1853.83 humidity 80.0 14400 > th dose independent rect. 22 5
146 1853.85 temperature 20.0 90 > th dose dependent rect. 24 9
150 1853.93 temperature 30.0 30 < th dose dependent rect. 8 1
153 1854.16 radiation 20.0 90 < th dose independent rect. 8 11
154 1854.20 radiation 40.0 43200 > th dose independent rect. 14 18
157 1854.35 radiation 40.0 43200 > th dose independent rect. 14 2
176 1854.66 wind 1.0 14400 < th dose independent rect. 2 1
193 1855.02 humidity 50.0 4320 > th dose independent rect. 9 1
195 1855.04 temperature 25.0 90 > th dose dependent rect. 22 11
197 1855.07 wind 9.0 43200 > th dose independent rect. 13 1
209 1855.77 wind 9.0 270 < th dose dependent rect. 19 19
216 1856.27 wind 5.0 720 < th dose dependent rect. 20 1
217 1856.47 atmosphere 1000.0 14400 > th dose independent rect. 16 1
218 1856.64 humidity 90.0 43200 < th dose dependent rect. 23 6
220 1856.82 atmosphere 1000.0 30 > th dose independent rect. 8 12
224 1856.96 wind 9.0 43200 > th dose dependent rect. 13 1
226 1857.04 temperature 30.0 43200 > th dose dependent rect. 8 1
246 1857.24 wind 9.0 43200 > th dose dependent rect. 13 3
248 1857.26 atmosphere 995.0 270 > th dose dependent rect. 24 9
254 1857.49 humidity 80.0 14400 < th dose independent rect. 22 1
274 1857.62 wind 9.0 43200 < th dose independent rect. 13 1
275 1857.67 wind 9.0 14400 > th dose dependent rect. 17 21
276 1857.76 temperature 20.0 270 > th dose independent rect. 24 9
278 1857.81 temperature 25.0 10 > th dose dependent rect. 10 6
279 1857.82 wind 5.0 270 < th dose independent rect. 19 19
280 1857.83 humidity 90.0 14400 < th dose dependent rect. 24 1
283 1857.94 temperature 25.0 10 < th dose independent rect. 4 17
284 1857.94 wind 9.0 720 < th dose dependent rect. 20 1
288 1858.00 humidity 50.0 1440 < th dose independent rect. 16 1
291 1858.18 temperature 30.0 43200 > th dose independent rect. 8 1
306 1858.34 humidity 90.0 43200 < th dose dependent rect. 23 3
308 1858.40 humidity 50.0 1440 < th dose dependent rect. 16 1
315 1858.57 atmosphere 1005.0 270 > th dose independent rect. 24 9
319 1858.65 humidity 50.0 720 > th dose dependent rect. 20 1
322 1858.66 temperature 30.0 43200 < th dose independent rect. 3 6
323 1858.73 temperature 30.0 43200 < th dose independent rect. 1 8
325 1858.80 wind 9.0 720 < th dose independent rect. 5 16
335 1859.08 temperature 30.0 43200 < th dose independent rect. 7 2
336 1859.08 humidity 80.0 14400 > th dose independent rect. 22 10
339 1859.14 humidity 50.0 1440 > th dose independent rect. 16 1
341 1859.14 wind 9.0 720 < th dose independent rect. 9 23
352 1859.33 wind 1.0 43200 < th dose dependent rect. 8 7
354 1859.38 temperature 30.0 43200 < th dose independent rect. 23 10
357 1859.43 temperature 30.0 43200 < th dose independent rect. 20 13
371 1859.81 atmosphere 1005.0 14400 < th dose independent rect. 8 1
373 1859.84 wind 1.0 43200 > th dose independent rect. 22 1
376 1859.99 radiation 10.0 90 < th dose independent rect. 12 7
386 1860.14 wind 3.0 720 < th dose independent rect. 20 1
397 1860.43 atmosphere 1010.0 14400 < th dose dependent rect. 20 1
398 1860.47 atmosphere 1005.0 90 > th dose dependent rect. 2 7
421 1861.13 temperature 15.0 10 > th dose dependent rect. 10 14
422 1861.14 radiation 10.0 43200 < th dose dependent rect. 7 4
424 1861.23 temperature 25.0 10 > th dose independent rect. 10 8
426 1861.30 radiation 20.0 90 < th dose dependent rect. 12 7
441 1861.34 temperature 30.0 720 < th dose independent rect. 18 13
462 1861.60 precipitation 0.1 43200 < th dose independent rect. 3 1
463 1861.60 precipitation 0.1 43200 < th dose dependent rect. 3 1
471 1861.86 atmosphere 1005.0 14400 > th dose independent rect. 7 2
472 1861.87 precipitation 0.1 43200 > th dose dependent rect. 3 1
490 1861.97 precipitation 0.1 720 < th dose independent rect. 9 8
491 1861.97 atmosphere 1005.0 14400 < th dose dependent rect. 16 1
492 1861.97 precipitation 0.1 720 < th dose dependent rect. 9 8
505 1862.17 atmosphere 1000.0 30 > th dose independent rect. 4 16
510 1862.23 atmosphere 1000.0 14400 < th dose independent rect. 16 1
511 1862.24 atmosphere 1005.0 14400 > th dose independent rect. 20 1
512 1862.24 precipitation 0.1 43200 > th dose independent rect. 3 1
514 1862.29 humidity 80.0 14400 < th dose independent rect. 22 10
519 1862.36 wind 9.0 43200 > th dose dependent rect. 15 1
521 1862.38 atmosphere 1005.0 14400 < th dose dependent rect. 8 15
547 1862.56 humidity 80.0 43200 > th dose independent rect. 17 13
562 1862.63 atmosphere 1005.0 14400 < th dose dependent rect. 8 10
579 1862.68 atmosphere 1005.0 14400 < th dose dependent rect. 10 8
585 1862.73 atmosphere 1005.0 14400 < th dose dependent sin 21 NA
621 1862.89 humidity 80.0 43200 > th dose independent sin 12 NA
627 1862.91 temperature 20.0 90 > th dose independent rect. 2 7
639 1862.94 temperature 10.0 720 > th dose independent rect. 9 8
640 1862.94 atmosphere 1015.0 720 < th dose independent rect. 9 8
641 1862.94 temperature 10.0 720 > th dose independent rect. 17 16
673 1863.04 atmosphere 1005.0 14400 < th dose dependent rect. 16 6
676 1863.05 temperature 20.0 90 > th dose dependent rect. 2 7
678 1863.06 radiation 20.0 30 < th dose independent rect. 20 12
717 1863.19 atmosphere 1005.0 14400 < th dose dependent rect. 16 20
720 1863.19 atmosphere 1005.0 14400 < th dose dependent rect. 19 23
731 1863.23 radiation 20.0 10 < th dose independent rect. 8 15
751 1863.27 atmosphere 1005.0 14400 < th dose dependent no NA NA
774 1863.29 atmosphere 1005.0 14400 < th dose dependent rect. 10 23
796 1863.35 temperature 25.0 90 > th dose independent rect. 9 8
823 1863.43 wind 9.0 14400 > th dose independent rect. 1 1
826 1863.43 wind 9.0 14400 > th dose dependent rect. 1 1
872 1863.51 atmosphere 1005.0 14400 < th dose dependent rect. 10 3
880 1863.53 atmosphere 1010.0 14400 < th dose dependent rect. 9 1
910 1863.58 atmosphere 1005.0 14400 < th dose dependent rect. 19 18
917 1863.60 wind 7.0 90 < th dose independent rect. 19 22
935 1863.63 temperature 30.0 720 > th dose dependent rect. 18 1
954 1863.64 humidity 80.0 43200 > th dose dependent rect. 7 1