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Os06g0696600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Xyloglucan endo-transglycosylase homolog.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0474) R2 : 0.665
β1 : -4.2 (0.176) R2dD : 0.448 R2D : 0.219
β2 : 1.43 (0.117) R2dC : 0.112 R2C : 0.0303
β3 : 1.25 (0.18) R2dE : 0.0375 R2E : -0.0615
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.77 (0.101) R2dN8 : 0.303 R2N8 : 0.131
σ : 0.883
deviance : 359.83
__
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C
peak time of C : 9.41
E
wheather : humidity
threshold : 78
memory length : 1308
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
342.91 0.87 10.8 -4.44 1.42 1.41 1.83 -2.08 -1.79 9.01 77 1338 -- --
348.3 0.869 10.8 -4.27 1.44 1.26 1.88 -- -1.77 9.12 77.92 1308 -- --
353.32 0.875 10.8 -4.42 1.47 1.47 -- -2.37 -1.77 9.37 76.55 1289 -- --
359.83 0.883 10.8 -4.2 1.43 1.25 -- -- -1.77 9.41 78 1308 -- --
463.24 1 10.8 -4.36 -- 1.35 -- -2.47 -1.77 -- 79 1453 -- --
384.53 0.919 10.8 -4.04 1.38 -- 1.99 -- -1.84 8.63 -- -- -- --
396.47 0.932 10.8 -3.97 1.37 -- -- -- -1.83 8.99 -- -- -- --
469.65 1.01 10.8 -4.16 -- 1.15 -- -- -1.78 -- 82 1466 -- --
595.64 1.14 10.6 -- 1.35 2.92 -- -- -1.11 9.08 69 47520 -- --
503.54 1.05 10.8 -3.97 -- -- -- -- -1.82 -- -- -- -- --
812.46 1.33 10.7 -- 1.36 -- -- -- -1.39 9.21 -- -- -- --
700.83 1.23 10.7 -- -- 2.93 -- -- -1.1 -- 69 47520 -- --
920.21 1.42 10.7 -- -- -- -- -- -1.38 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 336.77 humidity 50.0 270 > th dose independent rect. 10 17
2 337.13 humidity 50.0 270 > th dose dependent rect. 10 17
3 337.26 humidity 70.0 720 > th dose independent rect. 15 15
5 337.58 humidity 70.0 720 > th dose independent sin 12 NA
7 337.76 humidity 50.0 270 > th dose independent rect. 11 15
13 338.65 temperature 20.0 90 > th dose dependent rect. 17 16
15 338.92 temperature 20.0 30 > th dose independent rect. 4 8
16 338.99 radiation 1.0 90 > th dose independent rect. 17 19
17 339.03 humidity 70.0 720 > th dose independent rect. 14 7
19 339.08 radiation 1.0 270 > th dose independent rect. 16 17
21 339.22 humidity 60.0 720 > th dose dependent rect. 15 6
26 339.48 temperature 20.0 30 > th dose independent rect. 4 19
29 339.82 radiation 1.0 270 > th dose independent sin 11 NA
30 339.85 atmosphere 995.0 270 > th dose dependent rect. 3 7
37 340.15 temperature 15.0 90 > th dose dependent rect. 17 6
42 340.42 temperature 10.0 270 > th dose dependent rect. 15 7
48 340.60 humidity 70.0 720 > th dose independent rect. 14 12
58 341.01 atmosphere 995.0 10 > th dose dependent rect. 4 8
60 341.20 humidity 50.0 720 > th dose dependent sin 18 NA
62 341.23 wind 9.0 270 < th dose independent rect. 10 16
67 341.28 wind 9.0 10 < th dose independent rect. 12 16
68 341.30 humidity 50.0 720 > th dose dependent rect. 14 10
70 341.36 temperature 30.0 270 < th dose dependent rect. 21 7
71 341.38 temperature 30.0 30 < th dose independent rect. 12 16
73 341.40 humidity 80.0 1440 < th dose dependent rect. 15 4
78 341.50 humidity 80.0 1440 < th dose dependent rect. 16 2
116 342.15 humidity 80.0 1440 < th dose dependent rect. 11 8
128 342.34 humidity 80.0 1440 < th dose dependent rect. 11 21
136 342.43 humidity 50.0 1440 > th dose dependent rect. 16 1
164 342.69 humidity 50.0 1440 > th dose dependent rect. 15 3
184 342.84 humidity 50.0 720 > th dose dependent rect. 14 16
187 342.86 humidity 80.0 1440 < th dose dependent sin 17 NA
192 342.91 humidity 80.0 1440 < th dose dependent rect. 14 18
236 343.20 precipitation 0.1 270 < th dose independent rect. 2 8
237 343.20 precipitation 0.1 270 < th dose dependent rect. 2 8
242 343.24 humidity 70.0 720 > th dose independent rect. 18 8
247 343.27 humidity 70.0 1440 < th dose independent sin 13 NA
257 343.35 humidity 50.0 30 > th dose dependent rect. 12 16
262 343.37 humidity 90.0 90 < th dose dependent rect. 17 16
271 343.44 atmosphere 995.0 270 > th dose independent rect. 10 17
274 343.46 humidity 70.0 1440 < th dose independent rect. 15 17
278 343.48 humidity 90.0 90 < th dose dependent rect. 17 6
288 343.57 atmosphere 995.0 270 > th dose independent rect. 11 15
291 343.57 humidity 80.0 1440 < th dose dependent rect. 15 22
349 343.84 humidity 70.0 1440 < th dose dependent sin 13 NA
353 343.85 humidity 90.0 270 < th dose independent rect. 15 7
354 343.85 humidity 80.0 1440 < th dose dependent rect. 6 13
375 343.89 humidity 80.0 1440 < th dose dependent rect. 20 23
433 344.06 atmosphere 995.0 270 > th dose dependent rect. 4 5
442 344.08 radiation 1.0 90 < th dose independent rect. 23 17
506 344.18 humidity 80.0 1440 < th dose dependent no NA NA
515 344.19 wind 9.0 10 < th dose independent rect. 4 8
529 344.26 humidity 90.0 90 < th dose independent rect. 17 6
534 344.29 wind 9.0 270 < th dose independent rect. 2 8
537 344.30 atmosphere 995.0 270 > th dose independent rect. 2 8
538 344.30 atmosphere 1015.0 270 < th dose independent rect. 2 8
539 344.30 temperature 10.0 270 > th dose independent rect. 10 16
552 344.35 humidity 70.0 1440 < th dose independent rect. 17 15
573 344.45 humidity 70.0 1440 < th dose independent rect. 15 5
589 344.47 radiation 1.0 90 < th dose dependent rect. 23 17
595 344.51 humidity 50.0 270 > th dose independent rect. 2 8
617 344.65 radiation 1.0 270 < th dose dependent rect. 21 19
621 344.68 precipitation 0.1 10 < th dose independent rect. 4 8
625 344.68 precipitation 0.1 10 < th dose dependent rect. 4 8
649 344.84 temperature 10.0 10 > th dose independent rect. 4 8
651 344.84 atmosphere 995.0 10 > th dose independent rect. 4 8
652 344.84 atmosphere 1015.0 10 < th dose independent rect. 4 8
653 344.84 temperature 10.0 10 > th dose independent rect. 12 16
719 345.08 humidity 70.0 720 > th dose independent rect. 18 3
751 345.15 humidity 80.0 30 < th dose independent rect. 17 19
822 345.42 temperature 30.0 270 < th dose independent rect. 3 7
827 345.43 humidity 50.0 1440 > th dose dependent rect. 7 12
925 345.75 humidity 50.0 1440 > th dose dependent sin 22 NA
942 345.80 atmosphere 995.0 10 > th dose independent rect. 12 16
965 345.88 temperature 30.0 720 < th dose independent rect. 18 8
966 345.88 temperature 30.0 10 < th dose independent rect. 4 9