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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0539200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Xyloglucan endotransglycosylase XET2 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.16 (0.715) R2 : 0.306
β1 : 24.8 (6.63) R2dD : 5.4 R2D : -8.47
β2 : 1.13 (0.317) R2dC : 0.0219 R2C : -1.22
β3 : -23.3 (5.54) R2dE : 8.76 R2E : -10.9
β4 : -4.75 (1.35) R2dD*C : 0.0195 R2D*C : -1.27
β5 : 235 (52.7) R2dD*E : 16.2 R2D*E : -11.6
γ1 : -1.05 (0.252) R2dN8 : 0.0366 R2N8 : -1.48
σ : 2.19
deviance : 2167.08
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_____
C
peak time of C : 7.25
E
wheather : humidity
threshold : 50.81
memory length : 1380
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.9
open length of G : 1.07

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
2167.08 2.19 2.16 24.8 1.13 -23.3 -4.75 235 -1.05 7.25 50.81 1380 15.9 1.07
2354.11 2.28 5.36 -4.52 1.74 1.54 -3.39 -- -1.29 6.65 50.81 1380 15.9 1.07
2219.51 2.19 2.16 24.8 1.11 -23.3 -- 235 -1.04 6.79 51 1396 16 1.15
2284.72 2.23 5.31 -4.71 1.69 1.53 -- -- -1.03 6.43 61.38 1223 16 1.12
2284.98 2.23 2.19 24.7 -- -23.4 -- 237 -1.05 -- 50.79 1310 16 1.19
2358.76 2.28 5.36 -4.51 1.71 -- -3.46 -- -1.29 6.68 -- -- -- --
2385.32 2.29 5.36 -4.58 1.72 -- -- -- -1.29 6.13 -- -- -- --
2419.09 2.29 5.32 -4.7 -- 1.55 -- -- -0.963 -- 63 1255 16 1.08
2570.92 2.36 5.31 -- 1.35 2.6 -- -- -0.827 7.24 66 47372 16.4 0.0158
2538.8 2.35 5.39 -4.53 -- -- -- -- -1.25 -- -- -- -- --
2937.22 2.54 5.24 -- 1.66 -- -- -- -0.778 6.27 -- -- -- --
2644.26 2.39 5.18 -- -- 4 -- -- -0.415 -- 67.63 47520 16.4 0.0166
3079.51 2.59 5.27 -- -- -- -- -- -0.747 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 2169.93 humidity 50 1440 < th dose independent rect. 16 1
2 2170.81 humidity 50 1440 < th dose dependent rect. 16 1
3 2184.82 temperature 30 720 > th dose dependent rect. 18 1
17 2191.33 temperature 25 720 > th dose dependent rect. 21 2
18 2193.01 humidity 50 1440 > th dose independent rect. 16 1
53 2207.34 wind 1 90 < th dose independent rect. 4 1
54 2207.73 wind 1 90 < th dose dependent rect. 4 1
57 2211.26 humidity 90 90 > th dose dependent rect. 3 2
59 2212.12 humidity 70 720 < th dose dependent rect. 18 2
72 2212.51 humidity 70 720 < th dose independent rect. 17 3
104 2214.64 temperature 25 270 < th dose independent rect. 22 2
124 2220.73 temperature 25 10 < th dose independent rect. 22 4
147 2223.65 temperature 25 30 < th dose dependent rect. 4 1
164 2224.53 temperature 25 270 > th dose independent rect. 15 10
169 2225.23 temperature 25 270 < th dose independent rect. 19 6
215 2227.47 atmosphere 1005 90 > th dose independent rect. 2 7
217 2228.11 temperature 25 720 > th dose dependent sin 13 NA
229 2229.90 temperature 30 720 > th dose independent rect. 18 1
248 2230.51 humidity 70 720 > th dose independent rect. 18 14
265 2232.11 temperature 25 270 < th dose independent rect. 13 12
297 2235.52 atmosphere 1010 90 < th dose independent rect. 9 8
301 2236.19 atmosphere 1010 90 < th dose independent rect. 9 17
302 2236.28 temperature 25 270 > th dose independent sin 14 NA
326 2237.43 humidity 90 90 > th dose independent rect. 3 2
329 2237.52 wind 1 270 > th dose dependent rect. 2 7
349 2239.14 temperature 25 30 < th dose independent rect. 4 1
351 2239.20 temperature 25 270 > th dose independent rect. 15 16
354 2239.44 temperature 25 720 > th dose independent rect. 22 1
415 2243.54 atmosphere 1005 270 > th dose independent rect. 24 9
419 2243.71 atmosphere 1010 30 < th dose dependent rect. 4 1
421 2243.86 humidity 60 1440 > th dose independent rect. 18 2
423 2243.97 humidity 70 720 < th dose independent sin 12 NA
425 2244.21 temperature 25 270 < th dose independent sin 14 NA
443 2244.54 radiation 1 720 > th dose dependent rect. 18 1
474 2244.98 humidity 60 1440 > th dose independent rect. 18 5
487 2245.45 wind 3 270 > th dose independent rect. 3 6
488 2245.47 temperature 20 90 > th dose dependent rect. 3 2
490 2245.57 wind 7 14400 > th dose dependent rect. 12 2
496 2246.05 wind 9 14400 > th dose dependent rect. 20 18
503 2246.33 humidity 60 1440 > th dose independent rect. 18 9
518 2246.49 wind 9 14400 > th dose independent rect. 20 18
568 2247.53 atmosphere 1000 30 > th dose independent rect. 2 21
595 2248.31 wind 7 14400 > th dose dependent rect. 6 8
638 2248.84 wind 9 14400 < th dose independent rect. 20 20
642 2248.99 atmosphere 1010 90 < th dose independent rect. 5 10
651 2249.20 wind 9 14400 < th dose independent rect. 12 3
670 2249.68 humidity 50 1440 < th dose independent rect. 16 18
677 2249.85 wind 9 14400 < th dose independent rect. 9 6
709 2250.08 humidity 50 1440 > th dose independent rect. 16 18
711 2250.10 atmosphere 1005 10 > th dose independent rect. 24 10
713 2250.12 wind 9 14400 < th dose independent rect. 20 18
722 2250.34 atmosphere 995 270 > th dose dependent rect. 24 9
728 2250.51 wind 9 14400 < th dose independent rect. 5 10
744 2250.92 humidity 50 1440 < th dose dependent rect. 16 19
748 2251.04 humidity 80 14400 < th dose dependent rect. 22 10
751 2251.13 temperature 20 90 > th dose dependent rect. 18 15
755 2251.25 wind 9 14400 > th dose independent rect. 10 5
772 2251.68 wind 1 10 < th dose dependent rect. 4 6
820 2252.38 wind 1 10 > th dose independent sin 4 NA
839 2252.42 atmosphere 1005 30 > th dose independent rect. 4 1
847 2252.65 wind 9 14400 < th dose independent rect. 1 14
849 2252.69 wind 9 14400 < th dose independent rect. 23 16
851 2252.75 humidity 50 1440 < th dose independent sin 11 NA
903 2253.44 temperature 20 30 > th dose independent rect. 4 1
910 2253.57 wind 9 14400 > th dose independent rect. 12 3
961 2254.20 wind 7 14400 > th dose dependent rect. 23 17
965 2254.25 temperature 15 90 > th dose independent rect. 9 17
990 2254.47 temperature 30 1440 < th dose independent rect. 18 2
999 2254.73 temperature 30 1440 < th dose independent rect. 18 14