FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0696400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Xyloglucan endotransglucosylase/hydrolase protein 24 precursor (EC 2.4.1.207) (At-XTH24) (XTH-24) (Meristem protein 5) (MERI-5 protein) (MERI5 protein) (Endo-xyloglucan transferase) (Xyloglucan endo-1,4-beta-D-glucanase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.88 (0.0748) R2 : 0.237
β1 : 0.00118 (0.309) R2dD : -1.22e-06 R2D : -0.13
β2 : 0.703 (0.147) R2dC : 0.0393 R2C : -0.115
β3 : 90.3 (12.5) R2dE : 20.2 R2E : -19.6
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 409 (57.7) R2dD*E : 19.6 R2D*E : -20
γ1 : -0.5 (0.122) R2dN8 : 0.0374 R2N8 : -0.062
σ : 1.07
deviance : 525.13
__
_____
C
peak time of C : 7.7
E
wheather : wind
threshold : 6.998
memory length : 10
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19.1
open length of G : 6.92

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
511.29 1.06 3.88 0.0412 0.708 90.2 -2.21 408 -0.501 7.73 7.004 10 19.1 6.9
570.67 1.12 3.54 -1.58 0.618 1.06 -2.46 -- -0.523 7.68 7.004 10 19.1 6.9
525.13 1.07 3.88 0.00118 0.703 90.3 -- 409 -0.5 7.7 6.998 10 19.1 6.92
563.38 1.11 3.53 -1.58 0.638 1.87 -- -- -0.453 8.22 4.891 6 17.9 8.53
551.63 1.09 3.9 -0.00885 -- 90.2 -- 411 -0.492 -- 7.012 10 19.8 5.01
571.77 1.12 3.54 -1.59 0.608 -- -2.42 -- -0.527 7.68 -- -- -- --
588.38 1.14 3.54 -1.65 0.607 -- -- -- -0.523 7.68 -- -- -- --
585.22 1.13 3.56 -1.54 -- 2.35 -- -- -0.49 -- 5.121 8 18 3.98
608.54 1.16 3.49 -- 0.855 3.74 -- -- -0.35 7.53 4.566 2 17.2 6.77
608.2 1.15 3.56 -1.65 -- -- -- -- -0.514 -- -- -- -- --
660.55 1.2 3.5 -- 0.594 -- -- -- -0.339 7.87 -- -- -- --
645.13 1.19 3.51 -- -- 2.95 -- -- -0.337 -- 4.566 2 17.2 6.77
679.73 1.22 3.51 -- -- -- -- -- -0.332 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 511.30 wind 7 10 > th dose dependent rect. 19 3
6 512.01 wind 7 10 > th dose independent rect. 19 3
13 513.51 temperature 20 90 < th dose independent rect. 10 9
22 514.98 temperature 20 90 < th dose dependent rect. 10 10
23 515.15 wind 7 10 > th dose independent rect. 19 1
25 515.15 wind 7 10 > th dose dependent rect. 19 1
33 515.76 temperature 20 90 < th dose independent rect. 16 3
34 515.77 temperature 20 90 < th dose dependent rect. 16 3
39 516.20 temperature 20 90 < th dose dependent rect. 13 6
42 516.25 temperature 20 90 < th dose independent rect. 14 5
96 518.70 temperature 25 10 < th dose independent rect. 3 17
156 524.80 wind 7 90 < th dose dependent rect. 9 17
160 525.62 temperature 25 10 < th dose independent rect. 3 6
161 525.66 temperature 30 90 < th dose dependent rect. 2 7
164 526.01 temperature 30 90 < th dose dependent rect. 2 9
174 527.07 wind 5 90 > th dose dependent rect. 18 3
175 527.09 wind 5 10 > th dose dependent rect. 17 5
178 527.41 wind 5 90 > th dose dependent rect. 18 1
212 529.44 wind 5 90 > th dose independent rect. 17 4
219 529.79 wind 5 90 > th dose dependent rect. 17 6
224 529.95 wind 5 90 < th dose independent rect. 9 17
226 530.14 temperature 20 90 < th dose dependent rect. 2 3
251 531.50 temperature 25 90 < th dose independent rect. 19 7
254 531.83 temperature 25 90 < th dose independent rect. 21 5
255 531.89 wind 1 10 > th dose dependent rect. 3 20
258 532.06 temperature 30 10 < th dose dependent rect. 3 18
269 532.42 wind 5 10 > th dose dependent rect. 17 17
270 532.51 wind 5 90 > th dose independent rect. 17 6
278 532.74 wind 7 10 < th dose independent rect. 9 18
309 533.31 wind 5 90 > th dose dependent rect. 17 18
320 533.64 wind 7 90 < th dose dependent rect. 5 22
325 533.79 wind 7 10 < th dose dependent rect. 6 21
343 534.15 wind 1 10 > th dose dependent rect. 7 16
353 534.33 wind 9 10 > th dose dependent sin 12 NA
367 534.66 temperature 30 90 < th dose dependent rect. 19 7
378 534.82 wind 1 90 > th dose dependent sin 17 NA
382 534.85 temperature 25 270 < th dose independent rect. 21 2
400 535.20 wind 9 90 < th dose dependent sin 18 NA
403 535.26 wind 5 90 > th dose independent rect. 17 18
405 535.28 wind 5 10 > th dose independent rect. 17 6
413 535.43 wind 5 90 < th dose independent rect. 5 22
417 535.46 temperature 30 30 < th dose dependent rect. 21 6
429 535.73 wind 1 10 > th dose dependent rect. 7 14
431 535.78 wind 7 10 < th dose independent sin 17 NA
439 536.03 wind 5 90 > th dose dependent rect. 17 16
440 536.07 temperature 30 10 < th dose dependent rect. 19 8
471 536.52 wind 5 90 > th dose independent rect. 18 1
477 536.67 wind 9 30 > th dose dependent rect. 17 5
486 536.69 wind 7 90 < th dose dependent rect. 13 13
501 536.86 wind 5 10 > th dose dependent rect. 17 13
516 537.07 temperature 30 270 < th dose dependent rect. 24 8
574 537.54 wind 5 10 > th dose dependent sin 15 NA
578 537.58 wind 1 10 > th dose dependent sin 17 NA
651 538.20 wind 3 90 > th dose independent rect. 4 17
653 538.23 wind 5 10 > th dose independent rect. 17 17
660 538.30 wind 5 90 > th dose independent rect. 17 16
677 538.51 temperature 25 90 < th dose independent rect. 23 3
693 538.68 wind 5 10 < th dose independent rect. 12 15
726 538.94 wind 7 90 < th dose dependent rect. 15 11
735 539.02 wind 3 10 > th dose independent rect. 5 16
777 539.29 wind 9 10 > th dose dependent rect. 17 3
791 539.40 wind 9 30 < th dose dependent rect. 8 23
826 539.70 wind 5 90 < th dose independent rect. 13 13
840 539.78 wind 1 10 > th dose dependent rect. 14 9
848 539.81 wind 5 270 > th dose dependent rect. 2 18
871 540.03 humidity 90 90 > th dose independent rect. 2 9
906 540.34 wind 3 10 > th dose dependent rect. 15 19
912 540.37 humidity 90 270 < th dose independent rect. 3 2
915 540.39 wind 9 10 > th dose independent sin 13 NA
929 540.48 wind 9 10 < th dose independent sin 13 NA