Os04g0604900 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0604900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Xyloglucan endotransglycosylase (Fragment).

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.02	(0.0383)	R²	:	0.132
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	5.48	(0.668)	R²_dE	:	0.132	R²_E	:	0.131
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.0237	(0.0807)	R²_dN8	:	0.000486	R²_N8	:	-0.000221
σ	:	0.72
deviance	:	238.78
__

_____

C
peak time of C	:	--
E
wheather	:	radiation
threshold	:	25.73
memory length	:	44
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	7.38
open length of G	:	1.89

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
222.01	0.7	3.03	-0.415	0.216	2.08	-0.72	-7.61	-0.0444	7.38	7.844	83	7.25	0.516
228.84	0.705	3.03	-0.345	0.282	4.94	-1.13	--	-0.0221	7.16	25.68	44	7.38	1.9
223.32	0.696	3.03	-0.428	0.213	2.09	--	-8.07	-0.0421	7.57	7.667	83	7.24	0.513
232.16	0.71	3.03	-0.348	0.251	5.23	--	--	-0.00785	7.41	25.73	44	7.38	1.88
225.58	0.7	3.04	-0.433	--	2.2	--	-7.99	-0.0393	--	7.237	84	7.25	0.517
257.77	0.753	3.03	-0.418	0.356	--	-1.41	--	-0.0571	7.35	--	--	--	--
263.12	0.76	3.03	-0.448	0.353	--	--	--	-0.0538	7.68	--	--	--	--
235.24	0.714	3.03	-0.356	--	5.44	--	--	-0.00292	--	25.62	44	7.4	1.88
235.89	0.715	3.03	--	0.252	5.31	--	--	-0.0064	7.47	25.73	44	7.38	1.88
269.86	0.768	3.04	-0.443	--	--	--	--	-0.0486	--	--	--	--	--
268.42	0.766	3.02	--	0.35	--	--	--	-0.00388	7.77	--	--	--	--
238.78	0.72	3.02	--	--	5.48	--	--	0.0237	--	25.73	44	7.38	1.89
275.04	0.774	3.03	--	--	--	--	--	0.00059	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	224.55	temperature	15.0	90	> th	dose independent	rect.	8	23
2	225.94	radiation	10.0	90	> th	dose dependent	rect.	7	1
20	228.90	radiation	10.0	10	> th	dose dependent	rect.	17	16
35	228.97	temperature	20.0	90	> th	dose independent	rect.	7	1
82	230.23	radiation	30.0	90	> th	dose independent	rect.	7	1
99	230.33	humidity	70.0	10	< th	dose independent	rect.	7	1
159	230.33	humidity	70.0	10	< th	dose dependent	rect.	7	1
346	231.56	temperature	10.0	30	> th	dose dependent	rect.	9	22
553	232.59	temperature	25.0	10	< th	dose independent	rect.	7	1
663	233.14	humidity	60.0	90	< th	dose dependent	rect.	9	1
718	233.78	humidity	60.0	90	< th	dose independent	rect.	9	1
741	234.04	atmosphere	1005.0	30	> th	dose dependent	rect.	7	1
777	235.21	wind	9.0	90	< th	dose independent	rect.	8	23
843	236.50	temperature	30.0	30	< th	dose dependent	rect.	7	2
864	237.05	wind	9.0	10	< th	dose independent	rect.	9	22
866	237.16	wind	3.0	30	> th	dose independent	rect.	7	2
870	237.26	wind	1.0	10	> th	dose dependent	rect.	7	2
887	237.40	precipitation	0.1	90	< th	dose independent	rect.	8	23
888	237.40	precipitation	0.1	90	< th	dose dependent	rect.	8	23
889	237.46	wind	1.0	90	> th	dose dependent	rect.	7	1
890	237.50	wind	9.0	90	< th	dose independent	rect.	7	1
891	237.50	temperature	10.0	90	> th	dose independent	rect.	7	1
894	237.50	humidity	50.0	90	> th	dose independent	rect.	7	1
896	237.50	atmosphere	995.0	90	> th	dose independent	rect.	7	1
897	237.50	atmosphere	1015.0	90	< th	dose independent	rect.	7	1
902	237.55	precipitation	0.1	90	< th	dose independent	rect.	7	1
903	237.55	precipitation	0.1	90	< th	dose dependent	rect.	7	1
915	237.79	atmosphere	1010.0	30	< th	dose independent	rect.	9	22
919	237.90	atmosphere	995.0	90	> th	dose independent	rect.	8	23
931	238.07	atmosphere	1005.0	90	> th	dose independent	rect.	7	1
957	238.47	atmosphere	1010.0	10	< th	dose independent	rect.	7	2
973	238.74	temperature	15.0	270	> th	dose independent	rect.	5	23
974	238.76	temperature	10.0	1440	> th	dose independent	rect.	8	2
977	238.76	atmosphere	995.0	1440	> th	dose independent	rect.	8	2
980	238.76	atmosphere	1015.0	1440	< th	dose independent	rect.	8	2
981	238.76	temperature	10.0	1440	> th	dose independent	rect.	10	22