Os06g0696500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Xyloglycan endo-transglycosylase precursor.
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Os06g0696500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Xyloglycan endo-transglycosylase precursor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.26 | 0.254 | 3 | -0.27 | 0.152 | -0.245 | -0.198 | 0.854 | -0.0597 | 6.6 | 62 | 275 | -- | -- |
| 30.45 | 0.257 | 3 | -0.222 | 0.139 | -0.191 | 0.0523 | -- | -0.0555 | 6.83 | 71 | 238 | -- | -- |
| 29.34 | 0.252 | 3 | -0.269 | 0.147 | -0.235 | -- | 0.76 | -0.058 | 6.81 | 62 | 271 | -- | -- |
| 30.44 | 0.257 | 3.01 | -0.226 | 0.128 | -0.183 | -- | -- | -0.0563 | 6.47 | 71.38 | 207 | -- | -- |
| 29.96 | 0.255 | 3 | -0.265 | -- | -0.136 | -- | 0.709 | -0.0475 | -- | 61 | 217 | -- | -- |
| 31.05 | 0.261 | 3 | -0.227 | 0.0874 | -- | -0.175 | -- | -0.0386 | 12.4 | -- | -- | -- | -- |
| 31.17 | 0.261 | 3 | -0.234 | 0.0888 | -- | -- | -- | -0.0397 | 11.8 | -- | -- | -- | -- |
| 30.88 | 0.259 | 3.01 | -0.235 | -- | -0.111 | -- | -- | -0.0505 | -- | 73.09 | 73 | -- | -- |
| 31.78 | 0.263 | 3 | -- | 0.135 | -0.197 | -- | -- | -0.0339 | 6.41 | 72.35 | 217 | -- | -- |
| 31.67 | 0.263 | 3.01 | -0.237 | -- | -- | -- | -- | -0.0409 | -- | -- | -- | -- | -- |
| 32.61 | 0.267 | 3 | -- | 0.0917 | -- | -- | -- | -0.0137 | 11.9 | -- | -- | -- | -- |
| 32.26 | 0.265 | 3 | -- | -- | -0.121 | -- | -- | -0.0275 | -- | 76 | 70 | -- | -- |
| 33.14 | 0.269 | 3 | -- | -- | -- | -- | -- | -0.0146 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.36 | humidity | 60 | 1440 | > th | dose independent | rect. | 24 | 9 |
| 2 | 25.38 | humidity | 60 | 90 | < th | dose independent | rect. | 18 | 15 |
| 3 | 25.38 | humidity | 60 | 90 | < th | dose dependent | rect. | 18 | 15 |
| 7 | 25.45 | wind | 9 | 10 | > th | dose independent | rect. | 15 | 1 |
| 15 | 25.45 | wind | 9 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 23 | 25.46 | humidity | 60 | 270 | < th | dose independent | rect. | 8 | 1 |
| 50 | 25.46 | humidity | 60 | 30 | < th | dose independent | rect. | 17 | 17 |
| 52 | 25.46 | humidity | 60 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 102 | 25.48 | humidity | 60 | 30 | < th | dose independent | rect. | 9 | 1 |
| 140 | 25.48 | humidity | 60 | 1440 | > th | dose independent | rect. | 20 | 13 |
| 153 | 25.48 | humidity | 60 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 279 | 25.51 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 304 | 25.59 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 1 |
| 312 | 25.60 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 395 | 25.75 | radiation | 40 | 30 | > th | dose dependent | rect. | 9 | 2 |
| 778 | 26.56 | radiation | 40 | 10 | > th | dose dependent | sin | 12 | NA |
| 830 | 26.65 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 1 |
| 926 | 26.80 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 3 |
| 973 | 26.83 | wind | 1 | 10 | < th | dose dependent | sin | 21 | NA |
| 975 | 26.85 | wind | 1 | 10 | < th | dose independent | sin | 20 | NA |
| 976 | 26.85 | humidity | 60 | 10 | < th | dose independent | sin | 10 | NA |
| 984 | 26.87 | humidity | 90 | 270 | < th | dose dependent | rect. | 24 | 9 |
| 998 | 26.89 | radiation | 40 | 10 | > th | dose independent | sin | 11 | NA |
| 1000 | 26.89 | humidity | 80 | 270 | < th | dose independent | rect. | 1 | 6 |