BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0683000 Os06g0683000|AK120010
(465 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0683000 Zinc finger, C2H2-type domain containing protein 736 0.0
Os01g0785900 Zinc finger, C2H2-type domain containing protein 332 3e-91
Os04g0690100 Zinc finger, C2H2-type domain containing protein 192 4e-49
Os04g0115500 Zinc finger, C2H2-type domain containing protein 181 8e-46
Os11g0169400 Zinc finger, C2H2-type domain containing protein 170 2e-42
Os03g0264600 Zinc finger, C2H2-type domain containing protein 123 3e-28
>Os06g0683000 Zinc finger, C2H2-type domain containing protein
Length = 465
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/465 (80%), Positives = 375/465 (80%)
Query: 1 MNDISSYRLTVSSAQSLQYSAIXXXXXXXXXXXXXXMPTVWAALKKSLNCKSGDSCGVIE 60
MNDISSYRLTVSSAQSLQYSAI MPTVWAALKKSLNCKSGDSCGVIE
Sbjct: 1 MNDISSYRLTVSSAQSLQYSAIGLSGEEGESPEKGEMPTVWAALKKSLNCKSGDSCGVIE 60
Query: 61 REESQGGVXXXXXXXXXXXXXXXXXXCSRSIANLRDVFHSQYGGSRRQEDXXXXXXXXXX 120
REESQGGV CSRSIANLRDVFHSQYGGSRRQED
Sbjct: 61 REESQGGVTAGKKSSSTSAAALRRSGCSRSIANLRDVFHSQYGGSRRQEDAVAAAAAGEG 120
Query: 121 XXXXXSPRSIGSNDVLNPVTHDVLLAARSDAKCELRISTPXXXXXXXXXXXVPFPHSPLL 180
SPRSIGSNDVLNPVTHDVLLAARSDAKCELRISTP VPFPHSPLL
Sbjct: 121 DGGCGSPRSIGSNDVLNPVTHDVLLAARSDAKCELRISTPGRGAWAGAGGGVPFPHSPLL 180
Query: 181 LRCSTTPVSTRKSPSAMSPLRRXXXXXXXXXXXXXXXXXXXCEVGIRCHRCGDRFANHDA 240
LRCSTTPVSTRKSPSAMSPLRR CEVGIRCHRCGDRFANHDA
Sbjct: 181 LRCSTTPVSTRKSPSAMSPLRRADDDDDNAEAPSPAPARASCEVGIRCHRCGDRFANHDA 240
Query: 241 LESHHHSRHAVTELVEGDSSRKVVEIICKAGWAKTENALGRIERVVKVHNAERSVARFEE 300
LESHHHSRHAVTELVEGDSSRKVVEIICKAGWAKTENALGRIERVVKVHNAERSVARFEE
Sbjct: 241 LESHHHSRHAVTELVEGDSSRKVVEIICKAGWAKTENALGRIERVVKVHNAERSVARFEE 300
Query: 301 FREAVKGKAARLSKKHPRCLADGNELLRFHATTLACSLGAGDSSTLCTSGSCSVCRIIRH 360
FREAVKGKAARLSKKHPRCLADGNELLRFHATTLACSLGAGDSSTLCTSGSCSVCRIIRH
Sbjct: 301 FREAVKGKAARLSKKHPRCLADGNELLRFHATTLACSLGAGDSSTLCTSGSCSVCRIIRH 360
Query: 361 GFSATREIKDGVGVFTTSTSKRALECIXXXXXXXXXXXXXVRKALLVCRVVAGRIHRPLE 420
GFSATREIKDGVGVFTTSTSKRALECI VRKALLVCRVVAGRIHRPLE
Sbjct: 361 GFSATREIKDGVGVFTTSTSKRALECIAGDGDGDEAANAGVRKALLVCRVVAGRIHRPLE 420
Query: 421 NLQEVAAQPGFDSVAGKVGAYASIEELYLLNPRALLPCFVVICKP 465
NLQEVAAQPGFDSVAGKVGAYASIEELYLLNPRALLPCFVVICKP
Sbjct: 421 NLQEVAAQPGFDSVAGKVGAYASIEELYLLNPRALLPCFVVICKP 465
>Os01g0785900 Zinc finger, C2H2-type domain containing protein
Length = 485
Score = 332 bits (851), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 165/243 (67%), Positives = 195/243 (80%), Gaps = 3/243 (1%)
Query: 225 GIRCHRCGDRFANHDALESHHHSRHAVTELVEGDSSRKVVEIICKAGWAKTENALGRIER 284
G+ CHRCG++F+ +ALE+HH S+HAVTELVEGDSSRK+VEIIC+ K+E++ RIER
Sbjct: 242 GLSCHRCGEQFSKWEALEAHHLSKHAVTELVEGDSSRKIVEIICRTSLLKSESSCVRIER 301
Query: 285 VVKVHNAERSVARFEEFREAVKGKAARLSKKHPRCLADGNELLRFHATTLACSL-GAGDS 343
V KVHN +R++ARFEE+REAVK KA++L KKHPRCLADGNELLRFH TL+C+L GA S
Sbjct: 302 VFKVHNTQRTLARFEEYREAVKLKASKLPKKHPRCLADGNELLRFHGATLSCALGGAAGS 361
Query: 344 STLCTSGSCSVCRIIRHGFSATREIKDGVGVFTTSTSKRALECIXXXXXXXXXXX--XXV 401
S+LC S C+VCRIIRHGFSA +E K GVGVFTTSTS RA E I
Sbjct: 362 SSLCASDKCAVCRIIRHGFSAKKEGKAGVGVFTTSTSGRAYESIEASAGAVVGGDDPAAT 421
Query: 402 RKALLVCRVVAGRIHRPLENLQEVAAQPGFDSVAGKVGAYASIEELYLLNPRALLPCFVV 461
RKALLVCRV+AGR+H+PLENL+E A Q GFDS+AGKVG Y++IEELYLLNPRALLPCFVV
Sbjct: 422 RKALLVCRVIAGRVHKPLENLKEFAGQTGFDSLAGKVGPYSNIEELYLLNPRALLPCFVV 481
Query: 462 ICK 464
ICK
Sbjct: 482 ICK 484
>Os04g0690100 Zinc finger, C2H2-type domain containing protein
Length = 498
Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 147/237 (62%), Gaps = 13/237 (5%)
Query: 228 CHRCGDRFANHDALESHHHSRHAVTELVEGDSSRKVVEIICKAGWAKTENALGRIERVVK 287
C CG+ F D+L H RHAV+EL D+SR ++ II ++ W K ++ + I+R++K
Sbjct: 270 CPDCGEIFVRPDSLHLHQSIRHAVSELGAEDTSRNIISIIFQSSWLKKQSPVCAIDRILK 329
Query: 288 VHNAERSVARFEEFREAVKGKAARLSKKHPRCLADGNELLRFHATTLACSLGAGDSSTLC 347
VHNA R++ARF+++R AVK KA ++ +HPRC ADGNELLRFH TL+C LG ++ LC
Sbjct: 330 VHNAARTLARFDDYRAAVKAKA--MAHRHPRCTADGNELLRFHCATLSCDLGLHGATHLC 387
Query: 348 TSGSCSVCRIIRHGFSATREIKDGVGVFTTSTSKRALECIXXXXXXXXXXXXXVRKALLV 407
SC+ C IIRHGF R G G+ T +TS RA + + R+A+LV
Sbjct: 388 DHLSCAACAIIRHGF---RPPAPGAGIRTMATSGRAHDAVVSSGSEGD------RRAMLV 438
Query: 408 CRVVAGRIHR-PLENLQEVAAQPGFDSVAGKV-GAYASIEELYLLNPRALLPCFVVI 462
CRV+AGR+ R + +DSVAG G Y++++EL + NP A+LPCFVV+
Sbjct: 439 CRVIAGRVRREEAAAAAAEEEEEEYDSVAGTTPGLYSNLDELDVFNPTAILPCFVVV 495
>Os04g0115500 Zinc finger, C2H2-type domain containing protein
Length = 480
Score = 181 bits (460), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 145/239 (60%), Gaps = 11/239 (4%)
Query: 228 CHRCGDRFANHDALESHHHSRHAVTELVEGDSSRKVVEIICKAGWAKTENALGRIERVVK 287
C +CG+ F D+LE H RHAV+EL DS R +VEII K+ W K + + +I+R++K
Sbjct: 243 CSQCGEVFNKADSLEHHQAIRHAVSELGPEDSGRNIVEIIFKSSWQKRDRPICQIDRILK 302
Query: 288 VHNAERSVARFEEFREAVKGKAARLSKKHPRCLADGNELLRFHATTLACSLGAGDSSTLC 347
VHNA R+VARFE +R+AV+ + + + ADGNELLRFH LAC LG +++LC
Sbjct: 303 VHNAARTVARFEAYRDAVRTRCRATAARA---AADGNELLRFHPAALACPLGLNGATSLC 359
Query: 348 -TSGSCSVCRIIRHGFSATREIKDGVGVFTTSTSKRALECIXXXXXXXXXXXXXVRKALL 406
+C VC IRHGF A +GV TT++S RA +C +A+L
Sbjct: 360 DDDDACGVCAAIRHGF-APWAGAHPLGVRTTASSGRAHDCGAAAAAAQQAGGC---RAML 415
Query: 407 VCRVVAGRIHRPLENLQEVAAQPGFDSVAGKVGA---YASIEELYLLNPRALLPCFVVI 462
VCRV+AGR+ R ++ + FDSVAG A Y ++EEL++ NPRA+LPCFVVI
Sbjct: 416 VCRVIAGRVRRNDDDGGAEEEEGAFDSVAGDEAASSVYGNLEELFVANPRAILPCFVVI 474
>Os11g0169400 Zinc finger, C2H2-type domain containing protein
Length = 416
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/250 (41%), Positives = 147/250 (58%), Gaps = 25/250 (10%)
Query: 224 VGIRCHRCGDRFANHDALESHHHSRHAVTELVEGDSSRKVVEIICKAGWAKTENALGRIE 283
V C C + F D+LE H +RHAV+EL D+SR +VEII ++ W K + RIE
Sbjct: 177 VVFSCPDCDEVFVKPDSLELHRSTRHAVSELGADDTSRNIVEIIFQSSWLKKNAPVCRIE 236
Query: 284 RVVKVHNAERSVARFEEFREAVKGK---AARLSKKHPRCLADGNELLRFHATTLACSLGA 340
R++KV ++++++ RFE+ +EAVK K A + ++PRC+ADGNELLRFH TT ACSLG
Sbjct: 237 RILKVQSSDKTIKRFEQHKEAVKEKARSAGDEAGRNPRCVADGNELLRFHCTTFACSLGL 296
Query: 341 GDSSTLCTSGS------CSVCRIIRHGFSATREIKDGVGVFTT-STSKRALECIXXXXXX 393
+ LC + S C +C II+ GF DG G TT +TS RA +
Sbjct: 297 AGGTALCCASSSPPPLHCKLCSIIKDGFRV-----DGNGRITTMATSGRAHD-------T 344
Query: 394 XXXXXXXVRKALLVCRVVAGRIHRPLENLQEVAAQPGFDSVAG-KVGAYASIEELYLLNP 452
++A+LVCRVVAGR+ + + + DSV+ G Y+ ++EL++ +P
Sbjct: 345 AEVSPDGEKRAMLVCRVVAGRVKKL--HSSNSSEDHDCDSVSPCSEGVYSDLDELFVFSP 402
Query: 453 RALLPCFVVI 462
RA+LPCFVVI
Sbjct: 403 RAILPCFVVI 412
>Os03g0264600 Zinc finger, C2H2-type domain containing protein
Length = 454
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 133/253 (52%), Gaps = 30/253 (11%)
Query: 228 CHRCGDRFANHDALESHHHSRHAVTELVEGDSSRKVVEIICKAGWAKT----ENALGRIE 283
C CG+ + LE H +H+++EL DSS ++ +I AGW +
Sbjct: 211 CKVCGEVLSKPQQLELHQAMKHSLSELSSLDSSMNIIRMIFLAGWKPAVMPGAGEPPSVR 270
Query: 284 RVVKVHNAERSVARFEEFREAVKGKAARLSKK------HPRCLADGNELLRFHATTLACS 337
R++++H+ R + RFEE+R+ V+ +AAR RC+ADGNE LRF+ +T+ C+
Sbjct: 271 RILRIHHNPRVLTRFEEYRDLVRARAARRCAGAGAAAVEERCVADGNERLRFYCSTMLCT 330
Query: 338 LGAGDSSTLCTSGSCSVCRIIRHGFSATREIKDGVGVFTTSTSKRALECIXXXXXXXXXX 397
LGAG +C S C C I+RHGF+ + DG+ + +S RA
Sbjct: 331 LGAG----VCGSPYCCTCSILRHGFAGKQADVDGIATY---SSGRAAHASLPDDVEREFA 383
Query: 398 XXXVRKALLVCRVVAGRIHRPLENLQEVAAQPGFDSVAG--KVGAYASIE------ELYL 449
VR+A+LVCRVVAGR+ R + +VA +DS+ ++A+ EL +
Sbjct: 384 FLQVRRAMLVCRVVAGRVGRGAAD-DKVA----YDSMVPLLPTSSFAAATRGDDDVELLV 438
Query: 450 LNPRALLPCFVVI 462
NPRA+LPCFV+I
Sbjct: 439 FNPRAVLPCFVII 451
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.132 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,588,630
Number of extensions: 419943
Number of successful extensions: 1052
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1032
Number of HSP's successfully gapped: 7
Length of query: 465
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 361
Effective length of database: 11,605,545
Effective search space: 4189601745
Effective search space used: 4189601745
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)