BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0570000 Os06g0570000|Os06g0570000
(242 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0570000 498 e-141
Os12g0428300 Retrotransposon gag protein family protein 132 3e-31
Os03g0827200 129 2e-30
Os07g0195900 119 2e-27
Os10g0127200 98 4e-21
Os02g0519400 98 5e-21
Os09g0135100 Conserved hypothetical protein 96 3e-20
Os04g0192400 96 3e-20
Os08g0451600 Peptidase aspartic, catalytic domain containin... 93 2e-19
Os08g0285400 90 2e-18
Os01g0204400 85 6e-17
Os08g0321600 Conserved hypothetical protein 77 1e-14
Os12g0264400 77 1e-14
Os01g0341500 75 6e-14
Os05g0374700 67 8e-12
Os03g0156800 Cyclin-like F-box domain containing protein 67 2e-11
Os10g0520550 65 4e-11
>Os06g0570000
Length = 242
Score = 498 bits (1282), Expect = e-141, Method: Compositional matrix adjust.
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MESMEERLMDTLKALALKVDGVEDIAKRLTQIDLKLAQQGEWLDRVQTKVDLSMTSLGQV 60
MESMEERLMDTLKALALKVDGVEDIAKRLTQIDLKLAQQGEWLDRVQTKVDLSMTSLGQV
Sbjct: 1 MESMEERLMDTLKALALKVDGVEDIAKRLTQIDLKLAQQGEWLDRVQTKVDLSMTSLGQV 60
Query: 61 QQEQSQVWKLEVGWHDWTMLKMAIAGEFEGAQLGNVGKRHFQKRDPVVWKQPEKPKLATG 120
QQEQSQVWKLEVGWHDWTMLKMAIAGEFEGAQLGNVGKRHFQKRDPVVWKQPEKPKLATG
Sbjct: 61 QQEQSQVWKLEVGWHDWTMLKMAIAGEFEGAQLGNVGKRHFQKRDPVVWKQPEKPKLATG 120
Query: 121 ELWKAQQLKEYRRAHDLCFKCGDKYVPGHVCVKPDNAQLKAMEVQEDQVILSDDNLDAVV 180
ELWKAQQLKEYRRAHDLCFKCGDKYVPGHVCVKPDNAQLKAMEVQEDQVILSDDNLDAVV
Sbjct: 121 ELWKAQQLKEYRRAHDLCFKCGDKYVPGHVCVKPDNAQLKAMEVQEDQVILSDDNLDAVV 180
Query: 181 ASDMVEDDCNLSLHAMAVASNGGQSSYSDFGGFRLQLHPVSTVPISVKVANGELLSCEAT 240
ASDMVEDDCNLSLHAMAVASNGGQSSYSDFGGFRLQLHPVSTVPISVKVANGELLSCEAT
Sbjct: 181 ASDMVEDDCNLSLHAMAVASNGGQSSYSDFGGFRLQLHPVSTVPISVKVANGELLSCEAT 240
Query: 241 VP 242
VP
Sbjct: 241 VP 242
>Os12g0428300 Retrotransposon gag protein family protein
Length = 545
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/114 (57%), Positives = 80/114 (70%)
Query: 84 IAGEFEGAQLGNVGKRHFQKRDPVVWKQPEKPKLATGELWKAQQLKEYRRAHDLCFKCGD 143
+A E AQLG K+ K++ V + +K KLA GELWKAQQLKEYRRA LCFKCG+
Sbjct: 298 VALAHESAQLGTGTKKGHYKKEHVAIRGTDKLKLAPGELWKAQQLKEYRRAQGLCFKCGE 357
Query: 144 KYVPGHVCVKPDNAQLKAMEVQEDQVILSDDNLDAVVASDMVEDDCNLSLHAMA 197
KY PGHVC K + QLKA+ VQE+ +LSD+ LDA+ A D+ D +LSLHAMA
Sbjct: 358 KYAPGHVCAKQEGVQLKALHVQEESEVLSDEVLDAITALDVSSDSISLSLHAMA 411
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/70 (64%), Positives = 54/70 (77%)
Query: 1 MESMEERLMDTLKALALKVDGVEDIAKRLTQIDLKLAQQGEWLDRVQTKVDLSMTSLGQV 60
ME+MEER+M+ L LA KV+ +E I K L +ID KL GE LDRVQ K+DLSMTSLGQV
Sbjct: 1 MEAMEERVMEVLTRLAGKVENIEVITKHLEEIDAKLVSHGERLDRVQAKMDLSMTSLGQV 60
Query: 61 QQEQSQVWKL 70
QQEQSQV ++
Sbjct: 61 QQEQSQVARV 70
>Os03g0827200
Length = 437
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 71/89 (79%)
Query: 113 EKPKLATGELWKAQQLKEYRRAHDLCFKCGDKYVPGHVCVKPDNAQLKAMEVQEDQVILS 172
EK KLA GELWKAQQLKEYRRA LCFKCGDKY+PGHVC K + QLKAME+QE+ ++L+
Sbjct: 321 EKQKLAPGELWKAQQLKEYRRAQGLCFKCGDKYIPGHVCSKQETPQLKAMELQEEAIVLT 380
Query: 173 DDNLDAVVASDMVEDDCNLSLHAMAVASN 201
D+ LDAV ++ ED NLSLHA+A S+
Sbjct: 381 DELLDAVTGLELSEDSANLSLHALAGTSH 409
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/67 (73%), Positives = 56/67 (83%)
Query: 1 MESMEERLMDTLKALALKVDGVEDIAKRLTQIDLKLAQQGEWLDRVQTKVDLSMTSLGQV 60
M SMEER+M+ LK L +KV+ +EDI KRL ID KLAQQGE LDRVQTKVDLSMTSLGQV
Sbjct: 1 MASMEERVMEVLKELLVKVNTIEDIGKRLHLIDNKLAQQGERLDRVQTKVDLSMTSLGQV 60
Query: 61 QQEQSQV 67
QQEQ+ +
Sbjct: 61 QQEQTML 67
>Os07g0195900
Length = 527
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/178 (45%), Positives = 99/178 (55%), Gaps = 26/178 (14%)
Query: 88 FEGAQLGNVGKRHFQKRDPVVWKQPEKPKLATGELWKAQQLKEYRRAHDLCFKCGDKYVP 147
FEGAQ N + F K+D V K +K K ELWKAQQLK+YRRA+ LCFKCG+KY P
Sbjct: 181 FEGAQQLN---KSFVKKDTGVGKFGDKGKSTLRELWKAQQLKDYRRANGLCFKCGEKYSP 237
Query: 148 GHVCVKPDNAQLKAMEVQEDQVILSDDNLDAVVASDMVEDDCN-LSLHAMAVASN----- 201
HVC K + QLKAME+ + IL D LDA+ D DD LS+ A+A S+
Sbjct: 238 THVCGKVEGVQLKAMELTDTTEILDDSVLDALTNLDTPPDDGMLLSVQALAGTSSANSLQ 297
Query: 202 -----GGQ---------SSYSDFGG---FRLQLHPVSTVPISVKVANGELLSCEATVP 242
G Q SS+S RLQL VS P +VK+A+G LL+C A VP
Sbjct: 298 LRALVGNQVVLILVDSGSSHSFINADLCHRLQLPLVSCDPATVKIADGTLLTCSAQVP 355
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 48/64 (75%)
Query: 4 MEERLMDTLKALALKVDGVEDIAKRLTQIDLKLAQQGEWLDRVQTKVDLSMTSLGQVQQE 63
MEE + + L KV+ V+++ K+L QIDLKL QG+ LD VQ+KVDLSM+SLGQVQ E
Sbjct: 1 MEEHITQAIAVLVTKVERVDNLCKQLKQIDLKLETQGKRLDSVQSKVDLSMSSLGQVQHE 60
Query: 64 QSQV 67
Q+QV
Sbjct: 61 QAQV 64
>Os10g0127200
Length = 63
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/63 (80%), Positives = 55/63 (87%)
Query: 1 MESMEERLMDTLKALALKVDGVEDIAKRLTQIDLKLAQQGEWLDRVQTKVDLSMTSLGQV 60
MESMEERLMD +KA+A KVDG++ IAK L QIDLKLAQQ E LDRVQTKVD SMTSLGQV
Sbjct: 1 MESMEERLMDAMKAVAAKVDGMDGIAKHLAQIDLKLAQQDELLDRVQTKVDRSMTSLGQV 60
Query: 61 QQE 63
QQE
Sbjct: 61 QQE 63
>Os02g0519400
Length = 312
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 74/124 (59%), Gaps = 9/124 (7%)
Query: 113 EKPKLATGELWKAQQLKEYRRAHDLCFKCGDKYVPGHVCVKPDNAQLKAMEVQEDQVILS 172
EKPK +TGELWKAQQLKEYRR H LCFKCG+KY P H C + AQ+ +E + + +LS
Sbjct: 189 EKPKFSTGELWKAQQLKEYRRIHGLCFKCGEKYSPNHQCAQLPAAQVNVVETIDHKALLS 248
Query: 173 DDNLDAVVASDMVEDDCNLSLHAMAVASNGGQSSYSDFGGFRLQ-LHPVSTVPISVKVAN 231
D+ L+AV+ + + D ++ L A+A G Q RLQ + P P+ ++ +
Sbjct: 249 DEMLEAVMDVEDIGQDPDMFLSLNALAGWGDQ--------VRLQGVKPTVAQPLPLQAVS 300
Query: 232 GELL 235
E L
Sbjct: 301 AEQL 304
>Os09g0135100 Conserved hypothetical protein
Length = 404
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 65/100 (65%)
Query: 98 KRHFQKRDPVVWKQPEKPKLATGELWKAQQLKEYRRAHDLCFKCGDKYVPGHVCVKPDNA 157
K+ K++ + K + P G++WKAQQLKEY + H LCFKCGDKY P HVC K +
Sbjct: 182 KKGVHKKEGYLTKGIDTPAKVPGDIWKAQQLKEYHKTHGLCFKCGDKYAPRHVCAKQEGP 241
Query: 158 QLKAMEVQEDQVILSDDNLDAVVASDMVEDDCNLSLHAMA 197
QLKAMEV+++ +L+D+ LD V + ++ LS+ A++
Sbjct: 242 QLKAMEVEQNSEMLTDEMLDVVACLETQPENMLLSIQAIS 281
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 48/69 (69%)
Query: 1 MESMEERLMDTLKALALKVDGVEDIAKRLTQIDLKLAQQGEWLDRVQTKVDLSMTSLGQV 60
ME+ME RL+D +++L KV+ V + +L ID KL Q GE L +VQ KVDLSM SLGQV
Sbjct: 1 MEAMEGRLVDMIQSLVKKVEEVNVMGSKLEIIDKKLEQYGEQLGKVQAKVDLSMDSLGQV 60
Query: 61 QQEQSQVWK 69
Q EQ+ V K
Sbjct: 61 QMEQAFVTK 69
>Os04g0192400
Length = 637
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Query: 89 EGAQLGNVGKRHFQKRDPVVWKQPEKPKLATGELWKAQQLKEYRRAHDLCFKCGDKYVPG 148
EGA +G KR Q RD V + EKPKLA GELWKAQQLKEYRRA LCFKCGDKYV G
Sbjct: 560 EGAHIGQPRKRFNQCRDNAVGRGNEKPKLARGELWKAQQLKEYRRAQGLCFKCGDKYVSG 619
Query: 149 HVCVKPDNAQLKAM 162
VCVK + A+LK +
Sbjct: 620 QVCVKQE-AELKLL 632
>Os08g0451600 Peptidase aspartic, catalytic domain containing protein
Length = 707
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 87/155 (56%), Gaps = 35/155 (22%)
Query: 114 KPKLATGELWKAQQLKEYRRAHDLCFKCGDKYVPGHVCVKPDNAQLKAMEVQEDQVILSD 173
KP+ A ELWKA+QL++YRRA+ LCFKCGDKY P H C Q+KAM+V E ++ D
Sbjct: 67 KPERA--ELWKARQLRDYRRANGLCFKCGDKYSPEHQCAL--GGQIKAMQVTE---VIPD 119
Query: 174 DNLDAVVASDMVEDD--CNLSLHAMAVASN---------------------GGQSSYSDF 210
D L+AV A + + D C++SL++++ AS+ G S+ D+
Sbjct: 120 DLLNAVTAEEDSDQDENCHISLNSLSGASHVNTIRLRALVQNKVLLLLVDSGSSHSFLDY 179
Query: 211 GG---FRLQLHPVSTVPISVKVANGELLSCEATVP 242
LQL P++ P VKVANG+ + C+ VP
Sbjct: 180 NFAQLLGLQLQPIA--PSLVKVANGDCIHCQFMVP 212
>Os08g0285400
Length = 326
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 64/99 (64%), Gaps = 8/99 (8%)
Query: 110 KQPEKPKLATGELWKAQQLKEYRRAHDLCFKCGDKYVPGHVCVKPDNAQLKAMEVQEDQV 169
K +K K++TG+LWKAQQLKEYRR H LCF+CG+KY P H C + AQ+ +E +
Sbjct: 186 KGGDKSKISTGDLWKAQQLKEYRRIHGLCFRCGEKYSPNHQCAQIPAAQVNVVETIDHTD 245
Query: 170 ILSDDNLDAVVASDMVED-----DCNLSLHAMAVASNGG 203
+LSDD L+AV+ VED D LSL+A+A N G
Sbjct: 246 VLSDDILEAVME---VEDLGQNPDMFLSLNAVAGWGNTG 281
>Os01g0204400
Length = 142
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 81/153 (52%), Gaps = 23/153 (15%)
Query: 19 VDGVEDIAKRLTQIDLKLAQQGEWLDRVQTKVDLSMTSLGQVQQEQSQVWKLEVGWHDWT 78
++ +E I K + +ID +L QG L++V TKVDL+M S+G+VQ+
Sbjct: 6 LEKLEGITKWMHEIDQRLDSQGGSLEKVTTKVDLAMDSVGKVQES--------------- 50
Query: 79 MLKMAIAGEFEGAQLGNVGKRHFQKRDPVVWKQPEKPKLATGELWKAQQLKEYRRAHDLC 138
+A A G K K D P ++ +LWKA+QLK+YRRA LC
Sbjct: 51 ----VLASRATKALKGKFVKLPQYKSDISSDTAP--GRVDKEDLWKAKQLKDYRRAQGLC 104
Query: 139 FKCGDKYVPGHVCVKPDNAQLKAMEVQEDQVIL 171
FKCGDKY P H C Q+KAM+++E+ +++
Sbjct: 105 FKCGDKYTPEHRCAV--GGQIKAMQLEENNLMM 135
>Os08g0321600 Conserved hypothetical protein
Length = 125
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 49/66 (74%)
Query: 1 MESMEERLMDTLKALALKVDGVEDIAKRLTQIDLKLAQQGEWLDRVQTKVDLSMTSLGQV 60
ME ME R+M+ L LA KV+G++ I L +ID KL QGE LDRVQ K+DLS+T LGQV
Sbjct: 5 MEVMEARVMEVLTKLAGKVEGMDVITNHLGEIDAKLVTQGERLDRVQAKMDLSITLLGQV 64
Query: 61 QQEQSQ 66
QQEQS+
Sbjct: 65 QQEQSR 70
>Os12g0264400
Length = 468
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 50/67 (74%)
Query: 1 MESMEERLMDTLKALALKVDGVEDIAKRLTQIDLKLAQQGEWLDRVQTKVDLSMTSLGQV 60
++S+EE +M L L KVD ++ I K L +ID KL QGE LDRVQ K+DLSMTSLGQV
Sbjct: 4 VDSIEEWMMAVLTQLMAKVDNIDVITKHLGEIDAKLVTQGERLDRVQAKMDLSMTSLGQV 63
Query: 61 QQEQSQV 67
QQEQ+QV
Sbjct: 64 QQEQTQV 70
>Os01g0341500
Length = 420
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 1 MESMEERLMDTLKALALKVDGVEDIAKRLTQIDLKLAQQGEWLDRVQTKVDLSMTSLGQV 60
M MEERLM ++AL +KVD V+ + ++LTQID KL +QG LD VQ+KVDLSM SLGQV
Sbjct: 1 MGDMEERLMAAVQALTVKVDKVDALGQQLTQIDSKLEKQGARLDAVQSKVDLSMASLGQV 60
Query: 61 QQEQS 65
Q EQ+
Sbjct: 61 QCEQA 65
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 84 IAGEFEGAQLGNVGKRHFQKRDPVVWKQPEKPKLATGELWKAQQLKEYRRAHDLCFKCGD 143
+A FEGA ++ K+D K +K K+ G+LWKAQQLKEYRR H LCFKCG+
Sbjct: 278 VALAFEGA---FCNRKVAFKKDVGNVKFGDKGKVPVGDLWKAQQLKEYRRTHGLCFKCGE 334
Query: 144 KYVPGHVCVKPDNAQ 158
KY P H C K ++ +
Sbjct: 335 KYSPAHTCGKTEDVE 349
>Os05g0374700
Length = 466
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 32/42 (76%)
Query: 111 QPEKPKLATGELWKAQQLKEYRRAHDLCFKCGDKYVPGHVCV 152
+P +L ELWKA+QLKEYRRA+ LCFKCGDKY P H CV
Sbjct: 422 EPSAIQLEGAELWKAKQLKEYRRANGLCFKCGDKYSPDHQCV 463
>Os03g0156800 Cyclin-like F-box domain containing protein
Length = 723
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 36/47 (76%), Gaps = 2/47 (4%)
Query: 120 GELWKAQQLKEYRRAHDLCFKCGDKYVPGHVCVKPDNAQLKAMEVQE 166
G+LWKA+QLK+YRRA LCFKCGDKY P H C Q+KAM+++E
Sbjct: 153 GDLWKAKQLKDYRRAQGLCFKCGDKYTPEHRCAV--GGQIKAMQLEE 197
>Os10g0520550
Length = 364
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 2/44 (4%)
Query: 120 GELWKAQQLKEYRRAHDLCFKCGDKYVPGHVCVKPDNAQLKAME 163
G+LWKA+QLK+YRRA LCFKCGDKY P H C Q+KAM+
Sbjct: 311 GDLWKAKQLKDYRRAQGLCFKCGDKYTPEHRCAV--GGQIKAMQ 352
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.131 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,207,475
Number of extensions: 331153
Number of successful extensions: 864
Number of sequences better than 1.0e-10: 18
Number of HSP's gapped: 862
Number of HSP's successfully gapped: 23
Length of query: 242
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 144
Effective length of database: 11,918,829
Effective search space: 1716311376
Effective search space used: 1716311376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)