FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0570000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0524) R2 : 0.121
β1 : 0.221 (0.193) R2dD : 0.00266 R2D : 0.000489
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.39 (0.685) R2dE : 0.105 R2E : 0.00254
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 11.1 (1.8) R2dD*E : 0.0967 R2D*E : -0.00511
γ1 : -0.263 (0.112) R2dN8 : 0.0144 R2N8 : 0.0149
σ : 0.978
deviance : 441.33
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 19.61
memory length : 97
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.4
open length of G : 3.05

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
438.28 0.984 3.18 0.244 0.15 4.08 -0.723 10.2 -0.261 9.88 19.8 97 1.3 3.12
462.88 1.01 3.16 0.246 0.133 5.09 -0.787 -- -0.27 10.6 16.82 89 1.36 3.17
439.82 0.977 3.18 0.206 0.146 4.45 -- 11.2 -0.255 10.6 19.6 96 1.38 3.04
465.41 1.01 3.17 0.213 0.141 5.1 -- -- -0.272 9.96 16.8 86 1.38 3.15
441.33 0.978 3.18 0.221 -- 4.39 -- 11.1 -0.263 -- 19.61 97 1.4 3.05
488.66 1.04 3.17 0.286 0.12 -- -0.821 -- -0.279 10.9 -- -- -- --
491.17 1.04 3.17 0.25 0.15 -- -- -- -0.284 8.78 -- -- -- --
466.59 1.01 3.17 0.212 -- 5.1 -- -- -0.272 -- 16.8 86 1.38 3.15
466.6 1.01 3.17 -- 0.14 5.14 -- -- -0.296 9.85 16.8 86 1.38 3.15
492.45 1.04 3.17 0.25 -- -- -- -- -0.282 -- -- -- -- --
492.82 1.04 3.17 -- 0.151 -- -- -- -0.311 8.65 -- -- -- --
467.77 1.01 3.17 -- -- 5.14 -- -- -0.296 -- 16.8 86 1.38 3.15
494.1 1.04 3.18 -- -- -- -- -- -0.31 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 441.95 temperature 20 90 < th dose dependent rect. 1 3
2 442.77 temperature 20 10 < th dose dependent rect. 24 23
4 443.01 temperature 20 270 < th dose independent rect. 24 1
5 443.05 temperature 20 30 < th dose dependent rect. 24 5
6 443.09 temperature 20 270 < th dose dependent rect. 24 1
19 445.87 humidity 90 90 < th dose dependent rect. 1 3
29 447.07 temperature 20 90 < th dose dependent rect. 2 1
31 447.31 temperature 20 10 < th dose dependent rect. 24 13
38 447.62 temperature 20 10 < th dose dependent rect. 1 10
112 453.00 temperature 20 10 < th dose dependent sin 4 NA
118 453.96 humidity 90 90 < th dose dependent rect. 2 1
174 456.54 humidity 90 90 < th dose independent rect. 1 3
210 457.82 humidity 80 270 < th dose independent rect. 24 1
211 457.82 humidity 80 10 < th dose independent rect. 24 5
227 458.17 temperature 20 270 < th dose dependent rect. 9 19
240 459.42 temperature 20 10 < th dose dependent rect. 11 18
259 459.67 temperature 20 10 < th dose dependent rect. 6 23
267 459.78 temperature 20 10 < th dose dependent rect. 19 18
309 460.20 temperature 20 10 < th dose dependent no NA NA
313 460.22 temperature 20 270 < th dose dependent rect. 16 12
321 460.30 temperature 20 10 < th dose dependent rect. 21 23
331 460.45 atmosphere 1010 10 < th dose dependent rect. 6 1
335 460.57 temperature 20 10 < th dose dependent rect. 3 23
339 460.69 temperature 25 720 < th dose dependent rect. 17 1
351 460.86 humidity 80 10 < th dose independent rect. 21 8
468 462.37 temperature 20 10 < th dose dependent rect. 19 11
534 462.93 wind 3 90 > th dose independent rect. 2 2
583 463.23 atmosphere 1005 10 < th dose independent rect. 5 1
606 463.43 humidity 60 270 > th dose dependent rect. 19 16
627 463.76 humidity 80 10 < th dose dependent rect. 21 8
715 464.92 temperature 20 270 < th dose independent rect. 18 10
716 464.93 temperature 20 270 < th dose independent rect. 13 15
733 465.02 temperature 25 90 > th dose independent rect. 5 1
759 465.13 temperature 20 270 < th dose independent rect. 9 19
763 465.14 humidity 80 90 < th dose dependent rect. 20 8
823 465.64 temperature 25 90 > th dose dependent rect. 5 1
896 466.36 humidity 90 1440 < th dose independent rect. 1 2
936 466.61 wind 5 720 > th dose independent rect. 16 11
953 466.78 atmosphere 1010 90 < th dose dependent rect. 5 1
970 466.90 humidity 70 270 > th dose dependent rect. 19 22