BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0148900 Os06g0148900|AK107542
(368 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0148900 Protein of unknown function DUF295 family protein 672 0.0
Os06g0148800 Protein of unknown function DUF295 family protein 319 2e-87
Os12g0585200 Protein of unknown function DUF295 family protein 125 4e-29
Os06g0148600 Protein of unknown function DUF295 family protein 114 1e-25
Os12g0594400 100 3e-21
Os06g0148700 Cyclin-like F-box domain containing protein 86 4e-17
Os06g0148500 Cyclin-like F-box domain containing protein 69 6e-12
Os07g0499900 Cyclin-like F-box domain containing protein 67 2e-11
>Os06g0148900 Protein of unknown function DUF295 family protein
Length = 368
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/368 (92%), Positives = 341/368 (92%)
Query: 1 MHLSPQLGETMPSKKRKVELHADDQPPPTQAIMATPEPCSGRPWPDLPSELLGLVLLRLP 60
MHLSPQLGETMPSKKRKVELHADDQPPPTQAIMATPEPCSGRPWPDLPSELLGLVLLRLP
Sbjct: 1 MHLSPQLGETMPSKKRKVELHADDQPPPTQAIMATPEPCSGRPWPDLPSELLGLVLLRLP 60
Query: 61 SHADRVRLRAVCRPWRSSARVEXXXXXXXXXXXXXRGGAFITLPDGAAHRLPAVPGDATH 120
SHADRVRLRAVCRPWRSSARVE RGGAFITLPDGAAHRLPAVPGDATH
Sbjct: 61 SHADRVRLRAVCRPWRSSARVELDLLPPPLPWLLLRGGAFITLPDGAAHRLPAVPGDATH 120
Query: 121 LASTGSGLLIVHGDGMLSLMNXXXXXXXXXXXXXXVLPKYISSIVDIASFQGKLYYLTSD 180
LASTGSGLLIVHGDGMLSLMN VLPKYISSIVDIASFQGKLYYLTSD
Sbjct: 121 LASTGSGLLIVHGDGMLSLMNPSSLATTPLAALAAVLPKYISSIVDIASFQGKLYYLTSD 180
Query: 181 VRKRQEELYIFGVDNAKQIGIRCISSTLKDIGEESWFGPCSTERYATERYLVASNDRLLM 240
VRKRQEELYIFGVDNAKQIGIRCISSTLKDIGEESWFGPCSTERYATERYLVASNDRLLM
Sbjct: 181 VRKRQEELYIFGVDNAKQIGIRCISSTLKDIGEESWFGPCSTERYATERYLVASNDRLLM 240
Query: 241 VRRWINLPPIYPSDSGIVKRTRRFEVFEAADLSSGCGRWIKVDTLMGHALFVSKGCSKSL 300
VRRWINLPPIYPSDSGIVKRTRRFEVFEAADLSSGCGRWIKVDTLMGHALFVSKGCSKSL
Sbjct: 241 VRRWINLPPIYPSDSGIVKRTRRFEVFEAADLSSGCGRWIKVDTLMGHALFVSKGCSKSL 300
Query: 301 SAGAEEDCIYFMHEDIKNGKPEDPFLDSGVYNMRDGTVAPLLTETLVAEPLAVHGGPWCP 360
SAGAEEDCIYFMHEDIKNGKPEDPFLDSGVYNMRDGTVAPLLTETLVAEPLAVHGGPWCP
Sbjct: 301 SAGAEEDCIYFMHEDIKNGKPEDPFLDSGVYNMRDGTVAPLLTETLVAEPLAVHGGPWCP 360
Query: 361 TWLFPSET 368
TWLFPSET
Sbjct: 361 TWLFPSET 368
>Os06g0148800 Protein of unknown function DUF295 family protein
Length = 387
Score = 319 bits (818), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 195/388 (50%), Positives = 226/388 (58%), Gaps = 63/388 (16%)
Query: 33 MATPEPCSGRPWPDLPSELLGLVLLRLPSHADRVRLRAVCRPWRSSARVEXXXXXXXXXX 92
MA PC+G WPDLPSELLGLVLLRLPSH DRVRLRAVCRPWRSSAR+E
Sbjct: 1 MAAQRPCNGGSWPDLPSELLGLVLLRLPSHGDRVRLRAVCRPWRSSARLERKLLPPPLPW 60
Query: 93 XXXRGGAFITLPDGAAHRLPAVPGDATHLASTGSGLLIVHGDGMLSLMNXXXXXXXXXXX 152
GAF+TLPDGAAHR A+PGD HL TGSGLL+ H DGM SLMN
Sbjct: 61 LFLPDGAFLTLPDGAAHRRLAIPGDVAHLVPTGSGLLLAHNDGMFSLMNPSSSATTPLPD 120
Query: 153 XXXVLPKYISSIVDIASFQ-GK----------------LYYLTS---------------- 179
V I +FQ G+ +Y S
Sbjct: 121 LAAVFHGEIKCKYPDTAFQLGQRRITPIIKAVVSEHFIAFYFNSSKVIITSGQPHTVVKW 180
Query: 180 ---------DVRKRQEELY--IFGVDNAKQ--------------IGIRCISSTLKDIG-- 212
D+ Q +LY F ++N ++ ++CI ST +D+G
Sbjct: 181 SPPDSSYILDIALFQGKLYCLTFDIENCQEELYILEVRDEEPMVSDVKCIHSTPRDVGDE 240
Query: 213 EESWFGPCSTERYATERYLVASNDRLLMVRRWI--NLPPIYPSDSGIVKRTRRFEVFEAA 270
+E+WF P ST+RY RYLVA DRLLMV RWI NLPP+ P DS I KRTRRF+VFEA
Sbjct: 241 DEAWFNPHSTDRYTFHRYLVADGDRLLMVARWINLNLPPMLPRDSSI-KRTRRFDVFEAV 299
Query: 271 DLSSGCGRWIKVDTLMGHALFVSKGCSKSLSAGAEEDCIYFMHEDIKNGKPEDPFLDSGV 330
DLSS GRWIKVDTLMGH+LFVS+ CS+SL+AGAEEDCIYFM++ I N P+DP DSGV
Sbjct: 300 DLSSEHGRWIKVDTLMGHSLFVSESCSESLTAGAEEDCIYFMNDGIMNRIPKDPLSDSGV 359
Query: 331 YNMRDGTVAPLLTETLVAEPLAVHGGPW 358
YNMRDG VAPL+ ET V E LA H W
Sbjct: 360 YNMRDGMVAPLMPETAVTEHLAAHDESW 387
>Os12g0585200 Protein of unknown function DUF295 family protein
Length = 418
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 89/215 (41%), Positives = 118/215 (54%), Gaps = 22/215 (10%)
Query: 166 DIASFQGKLYYLTSDVRKRQEELYIFGVDNAKQIGIR-CISSTLKDIGEESWFGPCSTER 224
DIA G LY LT+ +L GVD+ R CI+ D + ++ ST+
Sbjct: 212 DIAFLGGNLYTLTNAEGLLVLDLGSNGVDDPPNASHRRCIAD---DPNQHEYYIDGSTKN 268
Query: 225 YA-TERYLVASNDRLLMVRRWINLPPIYPSDSGIVKRTRRFEVFEAADLSSGCGRWIKVD 283
+ RYLV SN RLLMVRRW+N Y +G + +TR FEVF AA +S G G+W+KVD
Sbjct: 269 KSLVLRYLVGSNGRLLMVRRWMNCRQQY--YAGDMDKTRGFEVF-AAVISDGHGQWVKVD 325
Query: 284 TLMGHALFVSKGCSKSLSA-----GAEEDCIYFMHEDIKNGKPE------DPFLDSGVYN 332
+L A+F+S CSKS++A G ++DCIYFMH N E DP DSGVYN
Sbjct: 326 SLGDQAIFLSSECSKSVTASQCADGIQQDCIYFMHRIYDNPTKECHGPCVDPLGDSGVYN 385
Query: 333 MRDGTVAPLLTETLVAEPLAVHGGPWCPTWLFPSE 367
MRDGT+ L +++E + TW FPS+
Sbjct: 386 MRDGTINLLRPRAVMSE---LRWKRQYLTWFFPSD 417
>Os06g0148600 Protein of unknown function DUF295 family protein
Length = 393
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 85/213 (39%), Positives = 111/213 (52%), Gaps = 15/213 (7%)
Query: 162 SSIVDIASFQGKLYYLTSDVRKRQEELYIFGVDNAKQIGIRCISSTLKDIGEESWFGPCS 221
++ DIA GKLY L+ + E+ ++ K + CI ++D ES PC
Sbjct: 186 NNFYDIAFCGGKLYALSCG-KLFTVEMSEVHIEKPKVPHVECI---VEDFPTESHSQPCP 241
Query: 222 TERY-ATERYLVASNDRLLMVRRWINLPPIYPSDSGIVKR--TRRFEVFEAADLSSGCGR 278
T YLVAS RLL V R + +P D I K T FEV+EA DL++G
Sbjct: 242 ENHICVTWPYLVASGGRLLNVIRLVGVPFPPEDDDDIFKDSLTFSFEVYEA-DLNTGSRM 300
Query: 279 WIKVDTLMGHALFVSKGCSKSLSA----GAEEDCIYFMHEDIKNGKPEDPFLDSGVYNMR 334
W +V++L ALFV + SKSLSA GA+EDCIYFM +D EDP D+G+YNMR
Sbjct: 301 WRRVESLGDQALFVGRHYSKSLSAAEYVGAQEDCIYFMCDDYFRSD-EDPLCDAGIYNMR 359
Query: 335 DGTVAPLLTETLVAEPLAVHGGPWCPTWLFPSE 367
G + PLL E P G PTW FP++
Sbjct: 360 SGVITPLLQEN--TAPRLHPTGEGHPTWFFPAD 390
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 58/98 (59%), Gaps = 3/98 (3%)
Query: 44 WPDLPSELLGLVLLRLPSHADRVRLRAVCRPWRSSARVEXXXXXXXXXXXXXRGGAFITL 103
W DL ++LGLVL RLPS ADRVRLRAVCRPWRS+A++ G F+++
Sbjct: 10 WADLQMDILGLVLRRLPSLADRVRLRAVCRPWRSNAQL--LTLPPPFPWLNLLDGTFLSI 67
Query: 104 PDGAAHRLPAVPGDATHLASTGSGLLIVHGDGMLSLMN 141
DG HR+P +P DA+ S + L + D SLMN
Sbjct: 68 SDGEIHRMP-LPDDASCYGSIDNWLFLTDSDDGCSLMN 104
>Os12g0594400
Length = 368
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 111/219 (50%), Gaps = 30/219 (13%)
Query: 162 SSIVDIASFQGKLYYLTSDVRKRQEELYIFGVDNAKQIGIRCI--SSTLKDIGEESWFGP 219
++I IA GKLY +TS +E L++ +DN + D ++S
Sbjct: 164 TAICAIAFLHGKLYAVTS-----KEGLHVLDLDNGGGGEGGAVLRPCIADDPEKKSVHVD 218
Query: 220 CSTERYATERYLVASNDRLLMVRRWINLPP-IYPSDSGIVKRTRRFEVFEAADLSSGCGR 278
+ RY+V S RLLMVR W +LPP ++ +D + RF+V EAAD G GR
Sbjct: 219 VERRGHLVVRYVVESGGRLLMVRWWKSLPPPVWSAD----RPPSRFDVLEAAD---GLGR 271
Query: 279 WIKVDTLMGHALFVSKGCSKSL-------SAGAEEDCIYFMHEDIKNGKPEDPFLDSGVY 331
W VD+L G ALF+ K S+S+ AGA EDCIYFM E+ F SGVY
Sbjct: 272 WKAVDSLRGRALFLGKADSRSVVAGGGGGGAGAREDCIYFMRRSFWYPSKEEDFGQSGVY 331
Query: 332 NMRDGTVA-PLLTETLVAEPLAVHGGPWC--PTWLFPSE 367
+MR G ++ P L E AE L +H C P W +P++
Sbjct: 332 DMRSGEISPPQLPERGTAE-LRLH----CEYPRWFYPAD 365
>Os06g0148700 Cyclin-like F-box domain containing protein
Length = 291
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/98 (50%), Positives = 60/98 (61%), Gaps = 3/98 (3%)
Query: 44 WPDLPSELLGLVLLRLPSHADRVRLRAVCRPWRSSARVEXXXXXXXXXXXXXRGGAFITL 103
W DL ELLGLVL RLPS ADRVRLRAVCRPWRS+AR++ G F+++
Sbjct: 10 WADLQPELLGLVLTRLPSLADRVRLRAVCRPWRSNARLQ--PLPPPLPWLTLLNGTFLSI 67
Query: 104 PDGAAHRLPAVPGDATHLASTGSGLLIVHGDGMLSLMN 141
DG H +P +P DA+ S + L + H DG SLMN
Sbjct: 68 SDGEIHCMP-LPDDASCHCSIDNWLFLSHDDGGFSLMN 104
>Os06g0148500 Cyclin-like F-box domain containing protein
Length = 81
Score = 68.6 bits (166), Expect = 6e-12, Method: Composition-based stats.
Identities = 30/39 (76%), Positives = 33/39 (84%)
Query: 44 WPDLPSELLGLVLLRLPSHADRVRLRAVCRPWRSSARVE 82
W D ELLGLVL RLPSHADRVRLRAVCRPWRS+A ++
Sbjct: 10 WADFQPELLGLVLRRLPSHADRVRLRAVCRPWRSNAEMQ 48
>Os07g0499900 Cyclin-like F-box domain containing protein
Length = 454
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 43 PWPDLPSELLGLVLLRLPSHADRVRLRAVCRPWRSSARVEXXXXXXXXXXXXXRGGAFIT 102
PW DLPS+LLGLV+ RLP ADR R RAVCR W S+ R G F+T
Sbjct: 9 PWSDLPSDLLGLVIARLPFPADRARFRAVCRAWHSALRRHVAAPPQLPWIVLPE-GTFVT 67
Query: 103 LPDGAAHRLPAVPGDATHLASTGSGLLIVH 132
+ DG HR+ A P T + G L +H
Sbjct: 68 VSDGGVHRM-AFPESNTVCIGSTDGWLALH 96
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,554,984
Number of extensions: 590539
Number of successful extensions: 2074
Number of sequences better than 1.0e-10: 9
Number of HSP's gapped: 2069
Number of HSP's successfully gapped: 12
Length of query: 368
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 266
Effective length of database: 11,709,973
Effective search space: 3114852818
Effective search space used: 3114852818
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)