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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0499900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.27 (0.022) R2 : 0.000221
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0147 (0.0462) R2dN8 : 0.000285 R2N8 : 0.000221
σ : 0.413
deviance : 78.44
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
73.72 0.403 3.28 0.184 0.144 0.282 -0.0161 1.23 -0.0175 6.71 90.83 5899 -- --
75.78 0.405 3.27 0.0933 0.153 0.331 -0.0437 -- -0.0614 6.39 92.54 4529 -- --
73.72 0.4 3.28 0.183 0.144 0.282 -- 1.23 -0.017 6.74 90.72 5901 -- --
75.75 0.405 3.28 0.0956 0.161 0.353 -- -- -0.0504 6.28 91.62 4550 -- --
74.78 0.403 3.28 0.179 -- 0.283 -- 1.21 -0.0151 -- 89.99 5835 -- --
77.19 0.412 3.26 0.0805 0.143 -- -0.0446 -- 0.0209 6.56 -- -- -- --
77.2 0.411 3.26 0.0801 0.142 -- -- -- 0.0211 6.68 -- -- -- --
76.89 0.408 3.27 0.114 -- 0.312 -- -- -0.0411 -- 89 5714 -- --
75.98 0.406 3.28 -- 0.161 0.347 -- -- -0.051 6.25 89 4545 -- --
78.25 0.413 3.26 0.0834 -- -- -- -- 0.0239 -- -- -- -- --
77.36 0.411 3.26 -- 0.143 -- -- -- 0.0122 6.65 -- -- -- --
77.12 0.409 3.28 -- -- 0.323 -- -- -0.043 -- 88.61 4337 -- --
78.44 0.413 3.27 -- -- -- -- -- 0.0147 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 68.91 atmosphere 1000.0 30 > th dose independent rect. 23 23
4 69.89 precipitation 0.1 1440 < th dose independent rect. 23 1
5 69.89 precipitation 0.1 1440 < th dose dependent rect. 23 1
7 69.96 temperature 25.0 30 > th dose dependent rect. 22 1
8 70.02 humidity 90.0 30 < th dose dependent rect. 22 1
9 70.03 wind 1.0 30 > th dose independent rect. 22 1
10 70.03 humidity 90.0 30 < th dose independent rect. 22 1
11 70.03 temperature 15.0 30 > th dose independent rect. 23 23
14 70.05 wind 9.0 1440 < th dose independent rect. 23 1
15 70.05 temperature 20.0 30 > th dose independent rect. 22 1
16 70.05 temperature 10.0 1440 > th dose independent rect. 23 1
19 70.05 temperature 30.0 1440 < th dose independent rect. 23 1
23 70.05 humidity 50.0 1440 > th dose independent rect. 23 1
33 70.05 atmosphere 995.0 1440 > th dose independent rect. 23 1
34 70.05 radiation 1.0 1440 < th dose independent rect. 23 1
54 70.05 temperature 10.0 1440 > th dose independent rect. 24 23
58 70.05 atmosphere 1005.0 30 > th dose dependent rect. 22 1
59 70.05 radiation 1.0 1440 < th dose dependent rect. 23 1
64 70.06 wind 5.0 30 < th dose independent rect. 22 1
66 70.06 wind 1.0 30 > th dose dependent rect. 22 1
70 70.07 temperature 10.0 30 > th dose independent rect. 22 1
72 70.07 temperature 30.0 30 < th dose independent rect. 22 1
73 70.07 humidity 50.0 30 > th dose independent rect. 22 1
77 70.07 atmosphere 995.0 30 > th dose independent rect. 22 1
78 70.07 atmosphere 1005.0 30 > th dose independent rect. 22 1
79 70.07 atmosphere 1010.0 30 < th dose independent rect. 22 1
81 70.07 radiation 1.0 30 < th dose independent rect. 22 1
86 70.07 precipitation 0.1 30 < th dose independent rect. 22 1
88 70.07 atmosphere 1015.0 30 < th dose dependent rect. 22 1
89 70.07 radiation 1.0 30 < th dose dependent rect. 22 1
94 70.07 precipitation 0.1 30 < th dose dependent rect. 22 1
95 70.08 wind 9.0 30 < th dose dependent rect. 22 1
96 70.08 humidity 50.0 30 > th dose dependent rect. 22 1
97 70.08 atmosphere 995.0 30 > th dose dependent rect. 22 1
110 70.14 temperature 30.0 30 < th dose dependent rect. 22 1
111 70.16 wind 9.0 30 < th dose independent rect. 23 23
124 70.24 radiation 10.0 43200 < th dose dependent rect. 23 1
151 70.28 precipitation 0.1 720 < th dose independent rect. 15 8
152 70.28 precipitation 0.1 720 < th dose dependent rect. 15 8
161 70.40 atmosphere 995.0 720 > th dose independent rect. 23 16
174 70.55 humidity 50.0 720 > th dose independent rect. 3 8
175 70.56 atmosphere 995.0 720 > th dose independent rect. 15 8
176 70.58 temperature 10.0 720 > th dose independent rect. 3 8
177 70.58 atmosphere 995.0 720 > th dose independent rect. 3 8
178 70.58 temperature 10.0 720 > th dose independent rect. 11 16
180 70.62 temperature 10.0 720 > th dose independent rect. 15 8
181 70.62 temperature 10.0 720 > th dose independent rect. 23 16
186 70.75 precipitation 0.1 720 < th dose independent rect. 11 16
188 70.75 precipitation 0.1 720 < th dose dependent rect. 11 16
189 70.77 precipitation 0.1 30 < th dose independent rect. 23 23
190 70.77 precipitation 0.1 30 < th dose dependent rect. 23 23
192 70.81 wind 9.0 720 < th dose independent rect. 3 8
196 71.03 temperature 20.0 30 > th dose dependent rect. 2 1
197 71.07 temperature 20.0 30 > th dose independent rect. 2 1
198 71.07 atmosphere 1005.0 30 > th dose independent rect. 2 1
200 71.08 atmosphere 1000.0 30 > th dose dependent rect. 2 1
205 71.16 wind 3.0 30 < th dose independent rect. 2 1
207 71.18 wind 5.0 30 < th dose dependent rect. 2 1
212 71.20 humidity 80.0 30 > th dose independent rect. 2 1
213 71.20 humidity 50.0 30 > th dose dependent rect. 2 1
217 71.21 temperature 10.0 30 > th dose independent rect. 2 1
219 71.21 temperature 30.0 30 < th dose independent rect. 2 1
220 71.21 humidity 50.0 30 > th dose independent rect. 2 1
224 71.21 atmosphere 1010.0 30 < th dose independent rect. 2 1
226 71.21 radiation 1.0 30 < th dose independent rect. 2 1
231 71.21 precipitation 0.1 30 < th dose independent rect. 2 1
232 71.21 temperature 10.0 30 > th dose independent rect. 3 23
234 71.21 radiation 1.0 30 < th dose dependent rect. 2 1
239 71.21 precipitation 0.1 30 < th dose dependent rect. 2 1
243 71.28 radiation 1.0 43200 < th dose dependent rect. 3 1
251 71.45 atmosphere 1000.0 30 > th dose independent rect. 3 23
252 71.46 atmosphere 1015.0 30 < th dose dependent rect. 2 1
254 71.53 wind 1.0 30 > th dose independent rect. 2 1
255 71.53 temperature 30.0 30 < th dose dependent rect. 2 1
260 71.63 humidity 50.0 30 > th dose independent rect. 23 23
285 71.87 wind 9.0 1440 < th dose independent rect. 3 1
286 71.87 temperature 10.0 1440 > th dose independent rect. 3 1
289 71.87 temperature 30.0 1440 < th dose independent rect. 3 1
293 71.87 humidity 50.0 1440 > th dose independent rect. 3 1
302 71.87 atmosphere 995.0 1440 > th dose independent rect. 3 1
303 71.87 radiation 1.0 1440 < th dose independent rect. 3 1
324 71.87 temperature 10.0 1440 > th dose independent rect. 4 23
333 71.89 atmosphere 1015.0 720 < th dose independent rect. 3 8
340 71.94 precipitation 0.1 720 < th dose independent rect. 3 8
341 71.94 precipitation 0.1 720 < th dose dependent rect. 3 8
348 72.09 radiation 40.0 720 < th dose independent rect. 15 8
351 72.10 humidity 80.0 14400 < th dose dependent rect. 3 6
388 72.27 wind 9.0 30 < th dose independent rect. 3 23
393 72.36 precipitation 0.1 720 < th dose independent rect. 23 16
395 72.36 precipitation 0.1 720 < th dose dependent rect. 23 16
396 72.37 wind 1.0 30 > th dose independent rect. 23 23
408 72.66 precipitation 0.1 30 < th dose independent rect. 3 23
409 72.66 precipitation 0.1 30 < th dose dependent rect. 3 23
417 72.74 humidity 70.0 14400 > th dose independent rect. 8 1
427 72.89 wind 1.0 720 > th dose independent rect. 15 8
428 72.89 wind 9.0 720 < th dose independent rect. 15 8
430 72.90 humidity 80.0 14400 < th dose dependent rect. 21 13
431 72.91 temperature 25.0 270 > th dose independent rect. 19 8
438 72.97 humidity 70.0 14400 > th dose independent rect. 24 9
440 72.98 humidity 70.0 14400 > th dose independent rect. 4 5
441 72.98 humidity 70.0 14400 > th dose independent rect. 2 7
444 72.98 humidity 70.0 14400 > th dose independent rect. 22 11
446 72.99 humidity 70.0 14400 > th dose independent rect. 6 3
453 73.02 wind 1.0 14400 < th dose dependent rect. 6 1
454 73.03 humidity 70.0 14400 < th dose independent rect. 8 1
467 73.13 temperature 25.0 720 > th dose dependent rect. 2 6
484 73.20 wind 9.0 720 < th dose independent rect. 23 16
487 73.22 temperature 25.0 90 > th dose independent rect. 21 6
491 73.23 temperature 30.0 720 < th dose independent rect. 15 8
492 73.23 humidity 70.0 14400 < th dose independent rect. 21 13
494 73.24 humidity 70.0 14400 < th dose independent rect. 7 3
510 73.28 temperature 25.0 720 > th dose independent rect. 3 6
541 73.44 temperature 25.0 720 > th dose dependent rect. 24 9
542 73.45 humidity 90.0 90 < th dose independent rect. 2 1
544 73.45 temperature 10.0 30 > th dose dependent rect. 23 23
547 73.47 atmosphere 1000.0 90 > th dose independent rect. 23 12
548 73.47 atmosphere 995.0 30 > th dose dependent rect. 23 23
549 73.48 wind 1.0 14400 > th dose independent rect. 4 3
552 73.50 wind 1.0 14400 < th dose independent rect. 4 3
554 73.51 wind 1.0 14400 < th dose dependent rect. 4 3
564 73.55 humidity 70.0 4320 > th dose dependent rect. 3 8
571 73.59 humidity 50.0 4320 > th dose dependent rect. 23 14
578 73.61 wind 1.0 14400 < th dose independent rect. 6 1
594 73.65 wind 5.0 14400 < th dose independent rect. 11 4
595 73.65 humidity 50.0 720 > th dose independent rect. 23 16
596 73.65 humidity 90.0 4320 < th dose dependent rect. 23 16
604 73.67 atmosphere 1015.0 30 < th dose independent rect. 23 23
652 73.73 humidity 50.0 4320 > th dose dependent sin 5 NA
681 73.75 wind 5.0 14400 > th dose independent rect. 11 4
684 73.75 radiation 10.0 30 < th dose independent rect. 23 23
698 73.76 wind 5.0 14400 < th dose independent rect. 10 7
699 73.76 humidity 90.0 4320 < th dose dependent sin 6 NA
712 73.77 humidity 80.0 4320 < th dose independent rect. 3 10
714 73.77 humidity 50.0 14400 > th dose dependent rect. 8 1
717 73.77 temperature 25.0 270 > th dose dependent rect. 19 8
754 73.80 humidity 60.0 14400 < th dose independent rect. 11 1
756 73.80 wind 5.0 14400 > th dose independent rect. 10 7
769 73.82 humidity 90.0 720 < th dose independent rect. 2 2
773 73.82 temperature 20.0 30 > th dose dependent rect. 22 5
781 73.83 humidity 50.0 4320 > th dose dependent rect. 11 1
790 73.84 wind 5.0 14400 < th dose independent rect. 11 1
828 73.86 humidity 90.0 4320 < th dose dependent rect. 11 2
856 73.88 humidity 50.0 30 > th dose independent rect. 3 23
872 73.90 humidity 80.0 4320 > th dose independent rect. 23 14
910 73.92 temperature 25.0 90 > th dose dependent rect. 21 7
918 73.93 temperature 25.0 720 < th dose independent rect. 2 7
976 73.96 humidity 70.0 4320 > th dose independent rect. 10 1
979 73.96 humidity 70.0 4320 > th dose independent rect. 8 7
986 73.96 atmosphere 995.0 1440 > th dose independent rect. 3 12
995 73.96 humidity 60.0 14400 < th dose dependent rect. 12 1