BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0499900 Os07g0499900|AK109745
         (454 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22180.1  | chr4:11738574-11739782 FORWARD LENGTH=403           56   5e-08
AT2G05970.1  | chr2:2308651-2309784 REVERSE LENGTH=378             51   1e-06
AT4G22170.1  | chr4:11736653-11737744 FORWARD LENGTH=364           51   1e-06

>AT4G22180.1 | chr4:11738574-11739782 FORWARD LENGTH=403
          Length = 402

 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 14/97 (14%)

Query: 10  WSDLPSDLLGLVIARLPFPADRARFRAVCRAWHSALRRHVAAPPQLPWIVL-PE------ 62
           WS+LP DLL  V  RL + A+  R ++VC +WHS  R+ V  P Q+PW++L PE      
Sbjct: 21  WSELPLDLLTAVFERLSY-ANFQRAKSVCSSWHSGSRQSV--PIQIPWLILFPEYDNNNS 77

Query: 63  -GTFVTVSDGGVHRM---AFPESNTVCIGSTDGWLAL 95
              F     G V++M       S +VC  +   WL +
Sbjct: 78  CTLFNPEEKGQVYKMKDLGVEFSKSVCTATYGSWLLM 114



>AT2G05970.1 | chr2:2308651-2309784 REVERSE LENGTH=378
          Length = 377

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 1  MAGTSTMAPWSDLPSDLLGLVIARLPFPADRARFRAVCRAWHSALRRHVAAPPQLPWIVL 60
          M  T+  A WS+L  D+L  V   L F +D  R R+VC +WHSA R  V    Q+PW++L
Sbjct: 1  MIETNKKASWSELCPDVLRCVFELLSF-SDLNRTRSVCSSWHSASRHCVPTQNQIPWLIL 59



>AT4G22170.1 | chr4:11736653-11737744 FORWARD LENGTH=364
          Length = 363

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 10 WSDLPSDLLGLVIARLPFPADRARFRAVCRAWHSALRRHVAAPPQLPWIVL-PE 62
          WSDLP DLL LV  RL F A+  R R+VC +W+SA R+ V    Q+ W++L PE
Sbjct: 10 WSDLPHDLLNLVFERLSF-ANFNRARSVCSSWYSASRQSVPK-NQIHWLILFPE 61



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.138    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,022,041
Number of extensions: 494950
Number of successful extensions: 1363
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1376
Number of HSP's successfully gapped: 3
Length of query: 454
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 352
Effective length of database: 8,310,137
Effective search space: 2925168224
Effective search space used: 2925168224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)