Os06g0148900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF295 family protein.
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Os06g0148900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF295 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 217.1 | 0.686 | 2.44 | 3.99 | 0.192 | 30.1 | -0.943 | -186 | -0.0035 | 6.57 | 995 | 1442 | -- | -- |
| 221.51 | 0.699 | 3.07 | 0.231 | 0.25 | -1.22 | -0.72 | -- | -0.00029 | 6.84 | 996.6 | 1340 | -- | -- |
| 218.9 | 0.689 | 2.45 | 3.95 | 0.202 | 29.8 | -- | -184 | 0.00131 | 8.17 | 995.1 | 1410 | -- | -- |
| 218.34 | 0.688 | 3.08 | 0.117 | 0.248 | -1.94 | -- | -- | -0.00477 | 7.68 | 996.6 | 1190 | -- | -- |
| 220.66 | 0.692 | 2.46 | 3.85 | -- | 30.1 | -- | -186 | 0.0172 | -- | 995 | 1097 | -- | -- |
| 235.99 | 0.72 | 3.08 | 0.299 | 0.25 | -- | -0.713 | -- | -0.0278 | 6.84 | -- | -- | -- | -- |
| 237.16 | 0.721 | 3.08 | 0.288 | 0.25 | -- | -- | -- | -0.025 | 7.58 | -- | -- | -- | -- |
| 220.53 | 0.692 | 3.08 | 0.214 | -- | -2.1 | -- | -- | 0.00895 | -- | 996.6 | 1190 | -- | -- |
| 219.06 | 0.689 | 3.07 | -- | 0.225 | -2.1 | -- | -- | -0.0171 | 7.89 | 996.6 | 1190 | -- | -- |
| 240.51 | 0.725 | 3.08 | 0.292 | -- | -- | -- | -- | -0.0212 | -- | -- | -- | -- | -- |
| 239.35 | 0.724 | 3.08 | -- | 0.253 | -- | -- | -- | -0.0571 | 7.5 | -- | -- | -- | -- |
| 221.73 | 0.694 | 3.08 | -- | -- | -2.15 | -- | -- | -0.0135 | -- | 996.6 | 1190 | -- | -- |
| 242.76 | 0.727 | 3.09 | -- | -- | -- | -- | -- | -0.0536 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 202.00 | wind | 1.0 | 270 | < th | dose independent | rect. | 18 | 1 |
| 2 | 202.00 | wind | 1.0 | 270 | < th | dose dependent | rect. | 18 | 1 |
| 3 | 202.62 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 3 | 5 |
| 5 | 203.50 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 6 | 203.67 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 6 | 2 |
| 7 | 203.69 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 5 | 3 |
| 8 | 203.71 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 6 | 2 |
| 20 | 204.74 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 21 | 204.75 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 53 | 205.94 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 4 | 8 |
| 71 | 206.53 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 4 | 5 |
| 79 | 206.59 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 94 | 206.94 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 106 | 207.24 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 121 | 207.50 | atmosphere | 1000.0 | 270 | < th | dose dependent | sin | 5 | NA |
| 160 | 208.35 | atmosphere | 1000.0 | 720 | < th | dose dependent | sin | 8 | NA |
| 176 | 208.72 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 222 | 209.84 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 248 | 210.39 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 4 | 8 |
| 276 | 210.88 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 14 | 1 |
| 279 | 210.94 | radiation | 10.0 | 10 | < th | dose independent | rect. | 14 | 1 |
| 281 | 210.95 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 13 | 1 |
| 284 | 210.95 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 13 | 1 |
| 319 | 211.50 | radiation | 10.0 | 90 | < th | dose independent | rect. | 12 | 1 |
| 376 | 212.20 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 392 | 212.33 | temperature | 25.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 486 | 213.18 | atmosphere | 1000.0 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 689 | 214.89 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 690 | 214.90 | atmosphere | 1000.0 | 90 | < th | dose independent | sin | 4 | NA |
| 714 | 215.06 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 16 | 13 |
| 717 | 215.08 | atmosphere | 1000.0 | 270 | > th | dose independent | sin | 5 | NA |
| 724 | 215.11 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 17 |
| 789 | 215.52 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 20 | 13 |
| 807 | 215.60 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 3 | 15 |
| 839 | 215.79 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 9 | 11 |
| 888 | 216.01 | atmosphere | 995.0 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 896 | 216.04 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 14 |
| 921 | 216.18 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 8 | 21 |
| 929 | 216.24 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 23 | 8 |
| 930 | 216.24 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 23 | 21 |
| 937 | 216.28 | atmosphere | 995.0 | 1440 | > th | dose independent | sin | 3 | NA |
| 970 | 216.41 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 972 | 216.42 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 982 | 216.45 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 19 | 16 |
| 998 | 216.55 | atmosphere | 995.0 | 1440 | < th | dose independent | rect. | 14 | 1 |