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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0148500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.35 (0.0244) R2 : 0.00021
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0159 (0.0514) R2dN8 : 0.000272 R2N8 : 0.00021
σ : 0.46
deviance : 96.93
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
90.03 0.442 3.95 1.36 0.194 -71 -0.157 -146 0.0338 7.05 15 90 -- --
90.15 0.446 3.35 0.0887 0.195 -1.6 -0.159 -- 0.031 7.16 15 90 -- --
90.09 0.442 3.96 1.37 0.193 -70.9 -- -146 0.0345 7.31 15.06 94 -- --
90.15 0.442 3.35 0.112 0.189 -1.46 -- -- 0.0285 7.26 14.7 99 -- --
92.06 0.447 3.97 1.4 -- -70.8 -- -146 0.0377 -- 15.16 85 -- --
95.02 0.457 3.35 0.0263 0.186 -- -0.206 -- 0.0144 6.32 -- -- -- --
95.08 0.457 3.35 0.0247 0.187 -- -- -- 0.0155 6.87 -- -- -- --
92.06 0.447 3.35 0.102 -- -1.56 -- -- 0.0378 -- 14.75 97 -- --
90.33 0.443 3.35 -- 0.193 -1.53 -- -- 0.0185 7.27 14.7 91 -- --
96.91 0.46 3.35 0.0287 -- -- -- -- 0.0191 -- -- -- -- --
95.1 0.456 3.35 -- 0.187 -- -- -- 0.0128 6.86 -- -- -- --
92.32 0.447 3.35 -- -- -1.51 -- -- 0.0258 -- 14.71 93 -- --
96.93 0.46 3.35 -- -- -- -- -- 0.0159 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 83.05 temperature 15.0 30 > th dose independent rect. 3 23
3 84.37 temperature 25.0 90 > th dose dependent rect. 2 2
4 84.58 temperature 25.0 90 > th dose independent rect. 1 3
5 84.83 temperature 25.0 90 > th dose dependent rect. 1 4
6 85.12 temperature 25.0 270 > th dose independent rect. 2 1
8 85.16 atmosphere 1005.0 10 > th dose dependent rect. 2 3
17 85.86 atmosphere 1000.0 30 > th dose independent rect. 3 23
20 86.29 temperature 15.0 30 > th dose independent rect. 5 21
22 86.45 radiation 1.0 43200 < th dose dependent rect. 3 1
23 86.62 atmosphere 1005.0 90 > th dose dependent rect. 2 1
31 87.14 temperature 15.0 10 > th dose independent rect. 14 12
33 87.24 temperature 15.0 10 > th dose independent rect. 5 23
53 87.50 wind 9.0 1440 < th dose independent rect. 3 1
54 87.50 temperature 10.0 1440 > th dose independent rect. 3 1
57 87.50 temperature 30.0 1440 < th dose independent rect. 3 1
61 87.50 humidity 50.0 1440 > th dose independent rect. 3 1
70 87.50 atmosphere 995.0 1440 > th dose independent rect. 3 1
71 87.50 radiation 1.0 1440 < th dose independent rect. 3 1
91 87.50 temperature 10.0 1440 > th dose independent rect. 4 23
103 87.52 temperature 15.0 10 > th dose independent rect. 16 10
106 87.56 temperature 15.0 720 > th dose independent rect. 15 8
113 87.66 wind 3.0 30 < th dose independent rect. 2 1
118 87.67 atmosphere 1005.0 30 > th dose independent rect. 2 1
119 87.68 temperature 15.0 720 > th dose independent rect. 14 1
120 87.68 wind 5.0 30 < th dose dependent rect. 2 1
130 87.72 humidity 90.0 30 > th dose independent rect. 2 1
131 87.72 humidity 50.0 30 > th dose dependent rect. 2 1
136 87.73 temperature 10.0 30 > th dose independent rect. 2 1
138 87.73 temperature 30.0 30 < th dose independent rect. 2 1
139 87.73 humidity 50.0 30 > th dose independent rect. 2 1
143 87.73 atmosphere 1010.0 30 < th dose independent rect. 2 1
145 87.73 radiation 1.0 30 < th dose independent rect. 2 1
150 87.73 precipitation 0.1 30 < th dose independent rect. 2 1
153 87.73 radiation 1.0 30 < th dose dependent rect. 2 1
158 87.73 precipitation 0.1 30 < th dose dependent rect. 2 1
164 87.81 atmosphere 1015.0 30 < th dose dependent rect. 2 1
166 87.88 temperature 30.0 30 < th dose dependent rect. 2 1
167 87.89 wind 1.0 30 > th dose independent rect. 2 1
175 88.00 precipitation 0.1 30 < th dose independent rect. 3 23
178 88.00 precipitation 0.1 30 < th dose dependent rect. 3 23
233 88.39 wind 9.0 30 < th dose independent rect. 3 23
234 88.41 temperature 15.0 270 > th dose independent rect. 13 11
247 88.70 humidity 90.0 1440 > th dose dependent rect. 12 2
257 88.86 temperature 10.0 30 > th dose dependent rect. 3 23
260 88.89 humidity 90.0 1440 > th dose independent rect. 12 2
269 88.98 temperature 15.0 1440 > th dose independent rect. 11 1
276 89.05 atmosphere 1005.0 30 > th dose independent rect. 2 3
279 89.09 temperature 10.0 30 > th dose dependent rect. 5 21
295 89.26 temperature 15.0 30 > th dose independent rect. 11 23
296 89.26 humidity 50.0 30 > th dose independent rect. 3 23
309 89.33 temperature 15.0 1440 > th dose independent rect. 8 16
318 89.45 temperature 15.0 720 > th dose independent rect. 10 14
325 89.48 temperature 15.0 1440 > th dose independent rect. 11 5
328 89.51 temperature 15.0 1440 > th dose independent rect. 8 14
332 89.54 precipitation 0.1 720 > th dose independent rect. 15 2
334 89.54 temperature 10.0 720 > th dose dependent rect. 14 1
335 89.55 atmosphere 1015.0 1440 < th dose independent rect. 24 8
337 89.55 temperature 15.0 270 > th dose independent rect. 20 13
338 89.56 temperature 15.0 720 > th dose independent rect. 13 4
340 89.57 humidity 90.0 1440 < th dose independent rect. 12 1
341 89.57 atmosphere 1000.0 30 > th dose independent rect. 5 21
348 89.63 precipitation 0.1 720 > th dose dependent rect. 15 2
355 89.65 temperature 15.0 1440 > th dose independent rect. 8 12
360 89.66 wind 5.0 30 < th dose dependent rect. 2 3
361 89.67 temperature 15.0 1440 > th dose independent rect. 11 7
364 89.69 temperature 15.0 1440 > th dose independent rect. 11 3
365 89.69 precipitation 0.1 720 > th dose independent rect. 14 4
367 89.70 humidity 90.0 720 < th dose independent rect. 14 1
369 89.71 humidity 90.0 1440 < th dose independent rect. 11 3
371 89.72 temperature 15.0 720 > th dose independent rect. 18 7
372 89.72 temperature 15.0 720 < th dose independent rect. 11 14
373 89.73 atmosphere 1015.0 1440 < th dose independent rect. 1 1
376 89.73 atmosphere 995.0 720 > th dose independent rect. 23 16
377 89.73 precipitation 0.1 720 > th dose dependent rect. 14 4
378 89.74 temperature 15.0 720 < th dose independent rect. 23 2
380 89.74 temperature 15.0 1440 > th dose independent rect. 10 12
383 89.75 temperature 15.0 30 > th dose independent rect. 1 23
388 89.77 temperature 15.0 720 < th dose dependent rect. 11 14
429 89.80 temperature 15.0 90 > th dose independent sin 7 NA
430 89.80 temperature 15.0 270 > th dose independent sin 10 NA
432 89.80 temperature 20.0 1440 < th dose dependent rect. 12 2
433 89.80 temperature 15.0 720 < th dose dependent rect. 23 2
437 89.81 temperature 15.0 90 > th dose independent sin 16 NA
438 89.81 temperature 15.0 270 > th dose independent sin 18 NA
440 89.81 temperature 15.0 1440 > th dose independent rect. 10 10
456 89.82 temperature 15.0 270 > th dose independent sin 21 NA
468 89.84 wind 3.0 30 < th dose independent rect. 2 3
483 89.85 humidity 80.0 14400 < th dose dependent rect. 3 6
487 89.86 temperature 15.0 720 > th dose independent rect. 5 19
505 89.87 humidity 90.0 90 < th dose independent rect. 2 3
516 89.88 humidity 90.0 90 < th dose independent rect. 2 1
518 89.88 radiation 1.0 720 < th dose independent rect. 11 2
531 89.88 temperature 15.0 1440 < th dose dependent sin 17 NA
535 89.88 radiation 1.0 720 < th dose dependent rect. 11 2
561 89.91 temperature 15.0 1440 > th dose independent rect. 16 4
572 89.92 temperature 15.0 4320 < th dose dependent rect. 4 1
576 89.93 precipitation 0.1 1440 > th dose independent rect. 12 1
583 89.93 precipitation 0.1 1440 > th dose dependent rect. 12 1
592 89.94 temperature 15.0 1440 > th dose independent rect. 16 6
601 89.96 temperature 15.0 10 > th dose independent sin 7 NA
637 89.96 temperature 15.0 10 > th dose independent sin 1 NA
649 89.96 temperature 15.0 1440 > th dose independent rect. 21 1
674 90.00 temperature 15.0 1440 > th dose independent sin 19 NA
681 90.01 temperature 20.0 720 < th dose independent rect. 12 1
682 90.01 temperature 15.0 1440 > th dose independent rect. 18 2
685 90.01 precipitation 0.1 720 < th dose independent rect. 23 16
690 90.01 precipitation 0.1 720 < th dose dependent rect. 23 16
725 90.03 temperature 15.0 90 > th dose independent no NA NA
727 90.03 temperature 15.0 90 < th dose independent sin 7 NA
775 90.03 temperature 15.0 90 < th dose independent no NA NA
777 90.03 temperature 15.0 1440 < th dose independent rect. 5 1
779 90.03 temperature 15.0 1440 < th dose independent rect. 9 1
782 90.03 atmosphere 1015.0 1440 > th dose independent rect. 1 1
849 90.03 precipitation 0.1 720 > th dose independent rect. 12 6
917 90.03 temperature 15.0 270 < th dose independent rect. 24 10