BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0592100 Os05g0592100|AK071333
(386 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0592100 Peptidase S14, ClpP family protein 622 e-178
Os03g0344900 Similar to Plastid catalytic subunit of ClpP5 ... 129 5e-30
Os01g0271400 Peptidase S14, ClpP family protein 129 5e-30
Os01g0507900 Similar to NClpP3 (ATP-dependent Clp protease ... 92 5e-19
Os10g0580800 Similar to NClpP4 (Fragment) 92 6e-19
AK065162 86 3e-17
Os02g0634500 Similar to ATP-dependent Clp protease proteoly... 86 4e-17
Os04g0525600 ATP-dependent Clp protease proteolytic subunit... 83 3e-16
Os03g0308100 Peptidase S14, ClpP family protein 77 1e-14
Os06g0136800 Peptidase S14, ClpP family protein 71 1e-12
>Os05g0592100 Peptidase S14, ClpP family protein
Length = 386
Score = 622 bits (1603), Expect = e-178, Method: Compositional matrix adjust.
Identities = 307/345 (88%), Positives = 307/345 (88%)
Query: 42 YYYGDGGGFRKNYDHIPKQFREENLKDGLMDNYKNVPQFLYGLSPAQIEMFMNDDNPYDR 101
YYYGDGGGFRKNYDHIPKQFREENLKDGLMDNYKNVPQFLYGLSPAQIEMFMNDDNPYDR
Sbjct: 42 YYYGDGGGFRKNYDHIPKQFREENLKDGLMDNYKNVPQFLYGLSPAQIEMFMNDDNPYDR 101
Query: 102 QSQRVTEESISASRSYDEFGMYNLSGMHEGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 161
QSQRVTEESISASRSYDEFGMYNLSGMHEGP
Sbjct: 102 QSQRVTEESISASRSYDEFGMYNLSGMHEGPAGYSMGMGMGTMSMGRAGRGYRRMRSSAP 161
Query: 162 XXXXXXXXXRIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYINSTGTMDENNELVA 221
RIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYINSTGTMDENNELVA
Sbjct: 162 DLPSLLLDSRIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYINSTGTMDENNELVA 221
Query: 222 SETDAFAIADFINRSKSKVYTINLSMAYGQAAMLLSLGVKGKRGVLPNSITKLYLPKVHK 281
SETDAFAIADFINRSKSKVYTINLSMAYGQAAMLLSLGVKGKRGVLPNSITKLYLPKVHK
Sbjct: 222 SETDAFAIADFINRSKSKVYTINLSMAYGQAAMLLSLGVKGKRGVLPNSITKLYLPKVHK 281
Query: 282 SGGAAIDMWIKAKELDTNTDYYLELLSKGVGKPKEELAEFLKGPRYFRAQEAIDYGLADT 341
SGGAAIDMWIKAKELDTNTDYYLELLSKGVGKPKEELAEFLKGPRYFRAQEAIDYGLADT
Sbjct: 282 SGGAAIDMWIKAKELDTNTDYYLELLSKGVGKPKEELAEFLKGPRYFRAQEAIDYGLADT 341
Query: 342 ILHSLDGSFKPKDLTAQLAKAQEMRQSGKRPAAGAGRWSTPSVPR 386
ILHSLDGSFKPKDLTAQLAKAQEMRQSGKRPAAGAGRWSTPSVPR
Sbjct: 342 ILHSLDGSFKPKDLTAQLAKAQEMRQSGKRPAAGAGRWSTPSVPR 386
>Os03g0344900 Similar to Plastid catalytic subunit of ClpP5 protease (Fragment)
Length = 349
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 117/182 (64%), Gaps = 9/182 (4%)
Query: 171 RIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYINSTGTMDENNELVASETDAFAIA 230
RI+++GMP+VPAVTEL+ AQ ++L++ + +P+Y+YINSTGT ++ E V E++ FAI
Sbjct: 139 RIVYIGMPLVPAVTELVVAQLMYLEWMNSKEPVYIYINSTGTARDDGEPVGMESEGFAIY 198
Query: 231 DFINRSKS---KVYTINLSMAYGQAAMLLSLGVKGKRGVLPN---SITKLYL--PKVHKS 282
D + R K+ +++T+ + A G A ++L+ G KGKR + P+ SI + P++
Sbjct: 199 DAMMRMKTEKIRIHTLCIGAAAGHACLVLAAGKKGKRYMFPHAKDSIMPAMIQQPRIPSY 258
Query: 283 GGA-AIDMWIKAKELDTNTDYYLELLSKGVGKPKEELAEFLKGPRYFRAQEAIDYGLADT 341
G A D+ I+AKE+ N + + LL++ G P E++ + ++GP Y + +A ++G+ D
Sbjct: 259 GMMQASDVVIRAKEVVHNRNTLVRLLARHTGNPPEKIDKVMRGPFYMDSLKAKEFGVIDK 318
Query: 342 IL 343
IL
Sbjct: 319 IL 320
>Os01g0271400 Peptidase S14, ClpP family protein
Length = 298
Score = 129 bits (323), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/175 (45%), Positives = 118/175 (67%), Gaps = 2/175 (1%)
Query: 171 RIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYINSTGTMDENNELVASETDAFAIA 230
RI++LGM +VP+VTEL+ A+FL+L YDD KPIYLYINSTGT +N E + ET+AFAI
Sbjct: 107 RIVYLGMCLVPSVTELMLAEFLYLQYDDAEKPIYLYINSTGT-TKNGEKLGYETEAFAIY 165
Query: 231 DFINRSKSKVYTINLSMAYGQAAMLLSLGVKGKRGVLPNSITKLYLPKVHKSGGAAIDMW 290
D + K ++T+ + A+G+AA+LL+ G KG R LP+S + P + + G A D+
Sbjct: 166 DAMRYVKVPIFTLCVGNAWGEAALLLAAGAKGNRAALPSSTIMIKQP-IGRFQGQATDVD 224
Query: 291 IKAKELDTNTDYYLELLSKGVGKPKEELAEFLKGPRYFRAQEAIDYGLADTILHS 345
I KE+ ++LLS+ +GK EE+A+ +K P+YF EA+DYG+ D +L++
Sbjct: 225 IARKEIRNVKIEMIKLLSRHIGKSVEEIAQDIKRPKYFSPSEAVDYGIIDKVLYN 279
>Os01g0507900 Similar to NClpP3 (ATP-dependent Clp protease proteolytic subunit
ClpP3)
Length = 314
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 91/173 (52%), Gaps = 10/173 (5%)
Query: 171 RIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYINSTGTMDENNELVASETDAFAIA 230
RI+FLG P+ +LI +Q L LD +D+TK I L+INS G S T +
Sbjct: 86 RIVFLGSPVDDMSADLIISQLLLLDAEDKTKDIKLFINSPG---------GSITAGMGVY 136
Query: 231 DFINRSKSKVYTINLSMAYGQAAMLLSLGVKGKRGVLPNSITKLYLPKVHKSGGAAIDMW 290
D + K+ + T+ +A A LL+ G KGKR +PN+ ++ P +GG +M
Sbjct: 137 DAMKFCKADISTVCFGLAASMGAFLLAAGTKGKRFCMPNARIMIHQPS-GGAGGKVTEMG 195
Query: 291 IKAKELDTNTDYYLELLSKGVGKPKEELAEFLKGPRYFRAQEAIDYGLADTIL 343
++ +E+ ++LS+ GKP+E++ E K + EA DYG+ D+++
Sbjct: 196 LQIREMMYEKIKINKILSRITGKPEEQIDEDTKFDYFMSPWEAKDYGIVDSVI 248
>Os10g0580800 Similar to NClpP4 (Fragment)
Length = 293
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 93/173 (53%), Gaps = 10/173 (5%)
Query: 171 RIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYINSTGTMDENNELVASETDAFAIA 230
RI+FLG I + + + +Q L LD D I L++NS G S + AI
Sbjct: 89 RIVFLGNEIEDFLADAVVSQLLLLDAVDPNSDIRLFVNSPG---------GSLSATMAIY 139
Query: 231 DFINRSKSKVYTINLSMAYGQAAMLLSLGVKGKRGVLPNSITKLYLPKVHKSGGAAIDMW 290
D + ++ V TI L +A A+++L G KGKR +PN+ ++ P V + G A+D+
Sbjct: 140 DVMQLVRADVSTIGLGIAGSTASIILGGGTKGKRFAMPNTRIMIHQP-VGGASGQALDVE 198
Query: 291 IKAKELDTNTDYYLELLSKGVGKPKEELAEFLKGPRYFRAQEAIDYGLADTIL 343
++AKE+ TN + L+S G+ E++ + + RY EA+DYGL D+++
Sbjct: 199 VQAKEILTNKRNVIRLISGFTGRTPEQVEKDIDRDRYMGPLEAVDYGLIDSVI 251
>AK065162
Length = 246
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 16/189 (8%)
Query: 171 RIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYINSTGTMDENNELVASETDAFAIA 230
RI+ + PI L+ AQ L+L+ ++ KP++LYINS G + T AI
Sbjct: 46 RIVLIHGPIANETASLVVAQLLFLESENPLKPVHLYINSPGGV---------VTAGLAIY 96
Query: 231 DFINRSKSKVYTINLSMAYGQAAMLLSLGVKGKRGVLPNSITKLYLPKVHKSGGA---AI 287
D + + V T+ + A ++LL+ G +G+R LPN+ ++ P SGGA A
Sbjct: 97 DTMQYIRCPVTTLCIGQAASMGSLLLAAGARGERRALPNARVMIHQP----SGGAQGQAT 152
Query: 288 DMWIKAKELDTNTDYYLELLSKGVGKPKEELAEFLKGPRYFRAQEAIDYGLADTILHSLD 347
D+ I+AKE+ D ++ K G+ +++ + ++ + +EA D+GL D ++ +
Sbjct: 153 DIAIQAKEILKLRDRLNKIYQKHTGQEIDKIEQCMERDLFMDPEEARDWGLIDEVIENRP 212
Query: 348 GSFKPKDLT 356
S P+ T
Sbjct: 213 ASLIPEGAT 221
>Os02g0634500 Similar to ATP-dependent Clp protease proteolytic subunit (EC
3.4.21.92) (Endopeptidase Clp)
Length = 298
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 96/189 (50%), Gaps = 16/189 (8%)
Query: 171 RIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYINSTGTMDENNELVASETDAFAIA 230
RI+ + PI L+ AQ L+L+ ++ KP++LYINS G + T AI
Sbjct: 98 RIVLIHGPIADETASLVVAQLLFLESENPLKPVHLYINSPGGV---------VTAGLAIY 148
Query: 231 DFINRSKSKVYTINLSMAYGQAAMLLSLGVKGKRGVLPNSITKLYLPKVHKSGGA---AI 287
D + + V T+ + A ++LL+ G +G+R LPN+ ++ P SGGA A
Sbjct: 149 DTMQYIRCPVTTLCIGQAASMGSLLLAAGARGERRALPNARVMIHQP----SGGAQGQAT 204
Query: 288 DMWIKAKELDTNTDYYLELLSKGVGKPKEELAEFLKGPRYFRAQEAIDYGLADTILHSLD 347
D+ I+AKE+ D ++ K G+ +++ + ++ + +EA D+GL D ++ +
Sbjct: 205 DIAIQAKEILKLRDRLNKIYQKHTGQEIDKIEQCMERDLFMDPEEARDWGLIDEVIENRP 264
Query: 348 GSFKPKDLT 356
S P+ T
Sbjct: 265 ASLIPEGAT 273
>Os04g0525600 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)
(Endopeptidase Clp)
Length = 309
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 90/173 (52%), Gaps = 10/173 (5%)
Query: 171 RIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYINSTGTMDENNELVASETDAFAIA 230
RI+ + PI L+ AQ L+L+ ++ KP++LYINS G + T AI
Sbjct: 111 RIVCIHGPITDDTASLVVAQLLFLESENPAKPVHLYINSPGGV---------VTAGLAIY 161
Query: 231 DFINRSKSKVYTINLSMAYGQAAMLLSLGVKGKRGVLPNSITKLYLPKVHKSGGAAIDMW 290
D + +S V T+ + A A++LL+ G +G+R LPN+ ++ P SG A+ D+
Sbjct: 162 DTMQYIRSPVTTLCIGQAASMASLLLAAGARGERRALPNARVMIHQPSGGASGQAS-DIA 220
Query: 291 IKAKELDTNTDYYLELLSKGVGKPKEELAEFLKGPRYFRAQEAIDYGLADTIL 343
I AKE+ D ++ +K + + + + ++ + +EA D+GL D ++
Sbjct: 221 IHAKEILKVRDRLNKIYAKHTSQAIDRIEQCMERDMFMDPEEAHDWGLIDEVI 273
>Os03g0308100 Peptidase S14, ClpP family protein
Length = 282
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 88/182 (48%), Gaps = 10/182 (5%)
Query: 171 RIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYINSTGTMDENNELVASETDAFAIA 230
RII G P+ + +I AQ L+LD D K I +Y+NS G S T AI
Sbjct: 106 RIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPG---------GSVTAGMAIF 156
Query: 231 DFINRSKSKVYTINLSMAYGQAAMLLSLGVKGKRGVLPNSITKLYLPKVHKSGGAAIDMW 290
D + + V T+ + +A A LLS G KGKR LPNS ++ P + + G D+
Sbjct: 157 DTMKHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQP-LGGAQGQETDLE 215
Query: 291 IKAKELDTNTDYYLELLSKGVGKPKEELAEFLKGPRYFRAQEAIDYGLADTILHSLDGSF 350
I+A E+ + L+ G+P +++ + A+EA +YGL D ++ + +
Sbjct: 216 IQANEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAKEYGLIDGVIMNPLKAL 275
Query: 351 KP 352
+P
Sbjct: 276 QP 277
>Os06g0136800 Peptidase S14, ClpP family protein
Length = 297
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 81/174 (46%), Gaps = 10/174 (5%)
Query: 171 RIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYINSTGTMDENNELVASETDAFAIA 230
RIIF+G I + + A L+LD D TK I LYIN G T A+
Sbjct: 112 RIIFIGDSIDEEFSNQVLASMLYLDSVDNTKKILLYINGPG---------GDLTPCMALY 162
Query: 231 DFINRSKSKVYTINLSMAYGQAAMLLSLGVKGKRGVLPNSITKLYLPKVHKSGGAAIDMW 290
D + KS + T L A+ A +L+ G KG R +P L P + G A D+
Sbjct: 163 DTMLSLKSPIGTHCLGFAFNLAGFILAAGEKGSRTGMPLCRISLQSP-AGAARGQADDIE 221
Query: 291 IKAKELDTNTDYYLELLSKGVGKPKEELAEFLKGPRYFRAQEAIDYGLADTILH 344
+A EL +Y LS+ G P +++ E L + F A+ A++YG+ D I+
Sbjct: 222 NEANELIRIKNYLYSKLSEHTGHPVDKIHEDLSRVKRFDAEGALEYGIIDRIIR 275
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.135 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,735,190
Number of extensions: 409857
Number of successful extensions: 992
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 977
Number of HSP's successfully gapped: 10
Length of query: 386
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 283
Effective length of database: 11,657,759
Effective search space: 3299145797
Effective search space used: 3299145797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)