Os01g0507900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NClpP3 (ATP-dependent Clp protease proteolytic subunit ClpP3).
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Os01g0507900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NClpP3 (ATP-dependent Clp protease proteolytic subunit ClpP3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.17 | 0.388 | 11.9 | -0.176 | 1.02 | 1.91 | -0.332 | -3.04 | -0.574 | 21.1 | 25 | 220 | -- | -- |
| 71.24 | 0.393 | 11.9 | 0.194 | 1.05 | 1.63 | -0.443 | -- | -0.485 | 20.8 | 25 | 199 | -- | -- |
| 68.51 | 0.386 | 11.9 | -0.142 | 1.04 | 1.9 | -- | -2.9 | -0.566 | 21.1 | 25 | 206 | -- | -- |
| 71.72 | 0.394 | 11.9 | 0.218 | 1.06 | 1.62 | -- | -- | -0.47 | 20.9 | 25 | 202 | -- | -- |
| 100.9 | 0.468 | 11.9 | -0.362 | -- | 2.35 | -- | -3.27 | -0.697 | -- | 24.53 | 469 | -- | -- |
| 114.82 | 0.502 | 11.8 | 0.485 | 1.5 | -- | -0.101 | -- | -0.348 | 19.2 | -- | -- | -- | -- |
| 114.84 | 0.502 | 11.8 | 0.487 | 1.5 | -- | -- | -- | -0.348 | 19.2 | -- | -- | -- | -- |
| 106.38 | 0.48 | 11.9 | 0.0896 | -- | 2.1 | -- | -- | -0.558 | -- | 24.6 | 499 | -- | -- |
| 72.93 | 0.398 | 11.9 | -- | 1.06 | 1.67 | -- | -- | -0.501 | 21 | 24.96 | 198 | -- | -- |
| 233.94 | 0.715 | 11.8 | 0.459 | -- | -- | -- | -- | -0.374 | -- | -- | -- | -- | -- |
| 121.09 | 0.515 | 11.9 | -- | 1.5 | -- | -- | -- | -0.403 | 19.2 | -- | -- | -- | -- |
| 106.58 | 0.481 | 11.9 | -- | -- | 2.12 | -- | -- | -0.57 | -- | 24.55 | 499 | -- | -- |
| 239.5 | 0.722 | 11.8 | -- | -- | -- | -- | -- | -0.425 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.58 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 2 | 67.76 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 14 |
| 5 | 67.94 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 43 | 68.55 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 51 | 68.63 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 7 |
| 73 | 68.78 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 123 | 69.11 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 145 | 69.26 | temperature | 25 | 270 | > th | dose dependent | sin | 0 | NA |
| 192 | 69.96 | temperature | 20 | 720 | > th | dose dependent | sin | 3 | NA |
| 252 | 70.97 | temperature | 25 | 90 | > th | dose dependent | sin | 21 | NA |
| 351 | 72.42 | temperature | 25 | 720 | > th | dose dependent | sin | 6 | NA |
| 460 | 73.15 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 9 |
| 557 | 73.77 | temperature | 10 | 720 | > th | dose dependent | sin | 2 | NA |
| 621 | 74.32 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 7 |
| 636 | 74.45 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 639 | 74.47 | temperature | 10 | 270 | > th | dose dependent | sin | 23 | NA |
| 748 | 75.29 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 7 |
| 805 | 75.77 | temperature | 30 | 720 | < th | dose dependent | sin | 2 | NA |
| 852 | 76.22 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |