BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0507900 Os01g0507900|AK102473
(314 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0507900 Similar to NClpP3 (ATP-dependent Clp protease ... 477 e-135
Os03g0308100 Peptidase S14, ClpP family protein 206 3e-53
Os10g0580800 Similar to NClpP4 (Fragment) 198 3e-51
Os02g0634500 Similar to ATP-dependent Clp protease proteoly... 183 1e-46
AK065162 181 5e-46
Os04g0525600 ATP-dependent Clp protease proteolytic subunit... 176 2e-44
Os03g0411500 Peptidase S14, ClpP family protein 156 2e-38
Os08g0252200 Similar to Photosystem II P680 chlorophyll A a... 134 6e-32
Os06g0136800 Peptidase S14, ClpP family protein 125 6e-29
Os01g0271400 Peptidase S14, ClpP family protein 107 2e-23
Os03g0344900 Similar to Plastid catalytic subunit of ClpP5 ... 103 2e-22
Os05g0592100 Peptidase S14, ClpP family protein 98 1e-20
Os10g0356400 70 1e-12
Os06g0598200 Similar to ATP-dependent Clp protease proteoly... 70 1e-12
>Os01g0507900 Similar to NClpP3 (ATP-dependent Clp protease proteolytic subunit
ClpP3)
Length = 314
Score = 477 bits (1228), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/286 (82%), Positives = 237/286 (82%)
Query: 29 NPCCWKXXXXXXXXXXXXXXXXXXXXXWELXXXXXXXXXXXXXXLEELDTTNMLLRQRIV 88
NPCCWK WEL LEELDTTNMLLRQRIV
Sbjct: 29 NPCCWKAAPRATVRASASAARRTLSSAWELPGPSAARPAARKPRLEELDTTNMLLRQRIV 88
Query: 89 FLGSPVDDMSADLIISQLLLLDAEDKTKDIKLFINSPGGSITAGMGVYDAMKFCKADIST 148
FLGSPVDDMSADLIISQLLLLDAEDKTKDIKLFINSPGGSITAGMGVYDAMKFCKADIST
Sbjct: 89 FLGSPVDDMSADLIISQLLLLDAEDKTKDIKLFINSPGGSITAGMGVYDAMKFCKADIST 148
Query: 149 VCFGLAASMGAFLLAAGTKGKRFCMPNARIMIHQPSGGAGGKVTEMGLQIREMMYEKIKI 208
VCFGLAASMGAFLLAAGTKGKRFCMPNARIMIHQPSGGAGGKVTEMGLQIREMMYEKIKI
Sbjct: 149 VCFGLAASMGAFLLAAGTKGKRFCMPNARIMIHQPSGGAGGKVTEMGLQIREMMYEKIKI 208
Query: 209 NKILSRITGKPEEQIDEDTKFDYFMSPWEAKDYGIVDSVIDEGKXXXXXXXXXXXXXXKS 268
NKILSRITGKPEEQIDEDTKFDYFMSPWEAKDYGIVDSVIDEGK KS
Sbjct: 209 NKILSRITGKPEEQIDEDTKFDYFMSPWEAKDYGIVDSVIDEGKPGLVAPLAGAVPPPKS 268
Query: 269 RVWYLWNASGPTRKIMKNLPSEEKLIQNGNGSASGDDGKFKEISTA 314
RVWYLWNASGPTRKIMKNLPSEEKLIQNGNGSASGDDGKFKEISTA
Sbjct: 269 RVWYLWNASGPTRKIMKNLPSEEKLIQNGNGSASGDDGKFKEISTA 314
>Os03g0308100 Peptidase S14, ClpP family protein
Length = 282
Score = 206 bits (523), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 94/171 (54%), Positives = 129/171 (75%)
Query: 78 TTNMLLRQRIVFLGSPVDDMSADLIISQLLLLDAEDKTKDIKLFINSPGGSITAGMGVYD 137
+ L + RI+ G PV+D A++I++QLL LDA D KDI +++NSPGGS+TAGM ++D
Sbjct: 98 VVSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAIDPNKDIIMYVNSPGGSVTAGMAIFD 157
Query: 138 AMKFCKADISTVCFGLAASMGAFLLAAGTKGKRFCMPNARIMIHQPSGGAGGKVTEMGLQ 197
MK + D+STVC GLAASMGAFLL+AGTKGKR+ +PN+RIMIHQP GGA G+ T++ +Q
Sbjct: 158 TMKHIRPDVSTVCIGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGQETDLEIQ 217
Query: 198 IREMMYEKIKINKILSRITGKPEEQIDEDTKFDYFMSPWEAKDYGIVDSVI 248
EM++ K +N L+ TG+P ++I+ DT DYFMS EAK+YG++D VI
Sbjct: 218 ANEMLHHKANLNGYLAYHTGQPLDKINVDTDRDYFMSAKEAKEYGLIDGVI 268
>Os10g0580800 Similar to NClpP4 (Fragment)
Length = 293
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 88/173 (50%), Positives = 125/173 (72%)
Query: 77 DTTNMLLRQRIVFLGSPVDDMSADLIISQLLLLDAEDKTKDIKLFINSPGGSITAGMGVY 136
D +LLR+RIVFLG+ ++D AD ++SQLLLLDA D DI+LF+NSPGGS++A M +Y
Sbjct: 80 DVMGLLLRERIVFLGNEIEDFLADAVVSQLLLLDAVDPNSDIRLFVNSPGGSLSATMAIY 139
Query: 137 DAMKFCKADISTVCFGLAASMGAFLLAAGTKGKRFCMPNARIMIHQPSGGAGGKVTEMGL 196
D M+ +AD+ST+ G+A S + +L GTKGKRF MPN RIMIHQP GGA G+ ++ +
Sbjct: 140 DVMQLVRADVSTIGLGIAGSTASIILGGGTKGKRFAMPNTRIMIHQPVGGASGQALDVEV 199
Query: 197 QIREMMYEKIKINKILSRITGKPEEQIDEDTKFDYFMSPWEAKDYGIVDSVID 249
Q +E++ K + +++S TG+ EQ+++D D +M P EA DYG++DSVID
Sbjct: 200 QAKEILTNKRNVIRLISGFTGRTPEQVEKDIDRDRYMGPLEAVDYGLIDSVID 252
>Os02g0634500 Similar to ATP-dependent Clp protease proteolytic subunit (EC
3.4.21.92) (Endopeptidase Clp)
Length = 298
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 78/173 (45%), Positives = 128/173 (73%)
Query: 77 DTTNMLLRQRIVFLGSPVDDMSADLIISQLLLLDAEDKTKDIKLFINSPGGSITAGMGVY 136
D + LL++RIV + P+ D +A L+++QLL L++E+ K + L+INSPGG +TAG+ +Y
Sbjct: 89 DIFSRLLKERIVLIHGPIADETASLVVAQLLFLESENPLKPVHLYINSPGGVVTAGLAIY 148
Query: 137 DAMKFCKADISTVCFGLAASMGAFLLAAGTKGKRFCMPNARIMIHQPSGGAGGKVTEMGL 196
D M++ + ++T+C G AASMG+ LLAAG +G+R +PNAR+MIHQPSGGA G+ T++ +
Sbjct: 149 DTMQYIRCPVTTLCIGQAASMGSLLLAAGARGERRALPNARVMIHQPSGGAQGQATDIAI 208
Query: 197 QIREMMYEKIKINKILSRITGKPEEQIDEDTKFDYFMSPWEAKDYGIVDSVID 249
Q +E++ + ++NKI + TG+ ++I++ + D FM P EA+D+G++D VI+
Sbjct: 209 QAKEILKLRDRLNKIYQKHTGQEIDKIEQCMERDLFMDPEEARDWGLIDEVIE 261
>AK065162
Length = 246
Score = 181 bits (460), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 77/173 (44%), Positives = 128/173 (73%)
Query: 77 DTTNMLLRQRIVFLGSPVDDMSADLIISQLLLLDAEDKTKDIKLFINSPGGSITAGMGVY 136
D + LL++RIV + P+ + +A L+++QLL L++E+ K + L+INSPGG +TAG+ +Y
Sbjct: 37 DIFSRLLKERIVLIHGPIANETASLVVAQLLFLESENPLKPVHLYINSPGGVVTAGLAIY 96
Query: 137 DAMKFCKADISTVCFGLAASMGAFLLAAGTKGKRFCMPNARIMIHQPSGGAGGKVTEMGL 196
D M++ + ++T+C G AASMG+ LLAAG +G+R +PNAR+MIHQPSGGA G+ T++ +
Sbjct: 97 DTMQYIRCPVTTLCIGQAASMGSLLLAAGARGERRALPNARVMIHQPSGGAQGQATDIAI 156
Query: 197 QIREMMYEKIKINKILSRITGKPEEQIDEDTKFDYFMSPWEAKDYGIVDSVID 249
Q +E++ + ++NKI + TG+ ++I++ + D FM P EA+D+G++D VI+
Sbjct: 157 QAKEILKLRDRLNKIYQKHTGQEIDKIEQCMERDLFMDPEEARDWGLIDEVIE 209
>Os04g0525600 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92)
(Endopeptidase Clp)
Length = 309
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 74/174 (42%), Positives = 126/174 (72%)
Query: 77 DTTNMLLRQRIVFLGSPVDDMSADLIISQLLLLDAEDKTKDIKLFINSPGGSITAGMGVY 136
D + LL++RIV + P+ D +A L+++QLL L++E+ K + L+INSPGG +TAG+ +Y
Sbjct: 102 DIFSRLLKERIVCIHGPITDDTASLVVAQLLFLESENPAKPVHLYINSPGGVVTAGLAIY 161
Query: 137 DAMKFCKADISTVCFGLAASMGAFLLAAGTKGKRFCMPNARIMIHQPSGGAGGKVTEMGL 196
D M++ ++ ++T+C G AASM + LLAAG +G+R +PNAR+MIHQPSGGA G+ +++ +
Sbjct: 162 DTMQYIRSPVTTLCIGQAASMASLLLAAGARGERRALPNARVMIHQPSGGASGQASDIAI 221
Query: 197 QIREMMYEKIKINKILSRITGKPEEQIDEDTKFDYFMSPWEAKDYGIVDSVIDE 250
+E++ + ++NKI ++ T + ++I++ + D FM P EA D+G++D VI+
Sbjct: 222 HAKEILKVRDRLNKIYAKHTSQAIDRIEQCMERDMFMDPEEAHDWGLIDEVIEH 275
>Os03g0411500 Peptidase S14, ClpP family protein
Length = 259
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 114/174 (65%)
Query: 76 LDTTNMLLRQRIVFLGSPVDDMSADLIISQLLLLDAEDKTKDIKLFINSPGGSITAGMGV 135
LD +LL RI+F+G ++ A +ISQL+ L A D+ DI +++N PGGS+ + + +
Sbjct: 83 LDLATVLLGNRIIFIGQYINSQVAQRVISQLVTLAAVDEEADILIYLNCPGGSLYSILAI 142
Query: 136 YDAMKFCKADISTVCFGLAASMGAFLLAAGTKGKRFCMPNARIMIHQPSGGAGGKVTEMG 195
YD M + K + TVCFG+ AS A +LA G KG R+ MPNAR+MIHQP G + G V E+
Sbjct: 143 YDCMSWIKPKVGTVCFGVVASQAAIILAGGEKGMRYAMPNARVMIHQPQGVSEGNVEEVR 202
Query: 196 LQIREMMYEKIKINKILSRITGKPEEQIDEDTKFDYFMSPWEAKDYGIVDSVID 249
Q+ E +Y + K++K+ + TG+ + + + T+ D FMS EA D+G+VD++++
Sbjct: 203 RQVGETIYARDKVDKMFAAFTGQTLDMVQQWTERDRFMSSSEAMDFGLVDALLE 256
>Os08g0252200 Similar to Photosystem II P680 chlorophyll A apoprotein (CP-47
protein)
Length = 216
Score = 134 bits (338), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 102/176 (57%), Gaps = 1/176 (0%)
Query: 76 LDTTNMLLRQRIVFLGSPVDDMSADLIISQLLLLDAEDKTKDIKLFINSPGGSITAGMGV 135
+D N++ R+R +FLG + + I ++ L ED DI LFINSPGG + +GM +
Sbjct: 21 VDLYNVMYRERTLFLGQEIRCEVTNHITGLMVYLSIEDGISDIFLFINSPGGWLISGMAI 80
Query: 136 YDAMKFCKADISTVCFGLAASMGAFLLAAGTKGKRFCMPNARIMIHQP-SGGAGGKVTEM 194
D M+ DI T+C G+AASM +F+L G KR P+ARIM+HQP S + E
Sbjct: 81 CDTMQTVTPDIYTICLGIAASMASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEF 140
Query: 195 GLQIREMMYEKIKINKILSRITGKPEEQIDEDTKFDYFMSPWEAKDYGIVDSVIDE 250
L++ E+ + I ++ + TGKP + ED + D FMS EAK YG+VD V DE
Sbjct: 141 LLEVEELHKVREMITRVYALRTGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDE 196
>Os06g0136800 Peptidase S14, ClpP family protein
Length = 297
Score = 125 bits (313), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 99/173 (57%)
Query: 76 LDTTNMLLRQRIVFLGSPVDDMSADLIISQLLLLDAEDKTKDIKLFINSPGGSITAGMGV 135
LD N L R+RI+F+G +D+ ++ +++ +L LD+ D TK I L+IN PGG +T M +
Sbjct: 102 LDIWNALYRERIIFIGDSIDEEFSNQVLASMLYLDSVDNTKKILLYINGPGGDLTPCMAL 161
Query: 136 YDAMKFCKADISTVCFGLAASMGAFLLAAGTKGKRFCMPNARIMIHQPSGGAGGKVTEMG 195
YD M K+ I T C G A ++ F+LAAG KG R MP RI + P+G A G+ ++
Sbjct: 162 YDTMLSLKSPIGTHCLGFAFNLAGFILAAGEKGSRTGMPLCRISLQSPAGAARGQADDIE 221
Query: 196 LQIREMMYEKIKINKILSRITGKPEEQIDEDTKFDYFMSPWEAKDYGIVDSVI 248
+ E++ K + LS TG P ++I ED A +YGI+D +I
Sbjct: 222 NEANELIRIKNYLYSKLSEHTGHPVDKIHEDLSRVKRFDAEGALEYGIIDRII 274
>Os01g0271400 Peptidase S14, ClpP family protein
Length = 298
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 103/180 (57%), Gaps = 8/180 (4%)
Query: 77 DTTNMLLRQRIVFLGSPVDDMSADLIISQLLLLDAEDKTKDIKLFINSPG--------GS 128
D + L + RIV+LG + +L++++ L L +D K I L+INS G G
Sbjct: 98 DLASFLYKNRIVYLGMCLVPSVTELMLAEFLYLQYDDAEKPIYLYINSTGTTKNGEKLGY 157
Query: 129 ITAGMGVYDAMKFCKADISTVCFGLAASMGAFLLAAGTKGKRFCMPNARIMIHQPSGGAG 188
T +YDAM++ K I T+C G A A LLAAG KG R +P++ IMI QP G
Sbjct: 158 ETEAFAIYDAMRYVKVPIFTLCVGNAWGEAALLLAAGAKGNRAALPSSTIMIKQPIGRFQ 217
Query: 189 GKVTEMGLQIREMMYEKIKINKILSRITGKPEEQIDEDTKFDYFMSPWEAKDYGIVDSVI 248
G+ T++ + +E+ KI++ K+LSR GK E+I +D K + SP EA DYGI+D V+
Sbjct: 218 GQATDVDIARKEIRNVKIEMIKLLSRHIGKSVEEIAQDIKRPKYFSPSEAVDYGIIDKVL 277
>Os03g0344900 Similar to Plastid catalytic subunit of ClpP5 protease (Fragment)
Length = 349
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 107/186 (57%), Gaps = 19/186 (10%)
Query: 86 RIVFLGSPVDDMSADLIISQLLLLDAEDKTKDIKLFINS---------PGGSITAGMGVY 136
RIV++G P+ +L+++QL+ L+ + + + ++INS P G + G +Y
Sbjct: 139 RIVYIGMPLVPAVTELVVAQLMYLEWMNSKEPVYIYINSTGTARDDGEPVGMESEGFAIY 198
Query: 137 DAM---KFCKADISTVCFGLAASMGAFLLAAGTKGKRFCMPNAR-----IMIHQPSGGAG 188
DAM K K I T+C G AA +LAAG KGKR+ P+A+ MI QP +
Sbjct: 199 DAMMRMKTEKIRIHTLCIGAAAGHACLVLAAGKKGKRYMFPHAKDSIMPAMIQQPRIPSY 258
Query: 189 G--KVTEMGLQIREMMYEKIKINKILSRITGKPEEQIDEDTKFDYFMSPWEAKDYGIVDS 246
G + +++ ++ +E+++ + + ++L+R TG P E+ID+ + ++M +AK++G++D
Sbjct: 259 GMMQASDVVIRAKEVVHNRNTLVRLLARHTGNPPEKIDKVMRGPFYMDSLKAKEFGVIDK 318
Query: 247 VIDEGK 252
++ G+
Sbjct: 319 ILWRGQ 324
>Os05g0592100 Peptidase S14, ClpP family protein
Length = 386
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 96/182 (52%), Gaps = 10/182 (5%)
Query: 77 DTTNMLLRQRIVFLGSPVDDMSADLIISQLLLLDAEDKTKDIKLFINSPG---------G 127
D ++LL RI+FLG P+ +LI +Q L LD +D+TK I L+INS G
Sbjct: 162 DLPSLLLDSRIIFLGMPIVPAVTELIAAQFLWLDYDDRTKPIYLYINSTGTMDENNELVA 221
Query: 128 SITAGMGVYDAMKFCKADISTVCFGLAASMGAFLLAAGTKGKRFCMPNARIMIHQPS-GG 186
S T + D + K+ + T+ +A A LL+ G KGKR +PN+ ++ P
Sbjct: 222 SETDAFAIADFINRSKSKVYTINLSMAYGQAAMLLSLGVKGKRGVLPNSITKLYLPKVHK 281
Query: 187 AGGKVTEMGLQIREMMYEKIKINKILSRITGKPEEQIDEDTKFDYFMSPWEAKDYGIVDS 246
+GG +M ++ +E+ ++LS+ GKP+E++ E K + EA DYG+ D+
Sbjct: 282 SGGAAIDMWIKAKELDTNTDYYLELLSKGVGKPKEELAEFLKGPRYFRAQEAIDYGLADT 341
Query: 247 VI 248
++
Sbjct: 342 IL 343
>Os10g0356400
Length = 115
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 157 MGAFLLAAGTKGKRFCMPNARIMIHQP-SGGAGGKVTEMGLQIREMMYEKIKINKILSRI 215
M +F+L G KR P+ARIM+HQP S + E L++ E+ + I ++ +
Sbjct: 1 MASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEELHKVREMITRVYALR 60
Query: 216 TGKPEEQIDEDTKFDYFMSPWEAKDYGIVDSVIDE 250
TGKP + ED + D FMS EAK YG+VD V DE
Sbjct: 61 TGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDE 95
>Os06g0598200 Similar to ATP-dependent Clp protease proteolytic subunit (EC
3.4.21.92) (Endopeptidase Clp)
Length = 115
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 157 MGAFLLAAGTKGKRFCMPNARIMIHQP-SGGAGGKVTEMGLQIREMMYEKIKINKILSRI 215
M +F+L G KR P+ARIM+HQP S + E L++ E+ + I ++ +
Sbjct: 1 MASFILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEVEELHKVREMITRVYALR 60
Query: 216 TGKPEEQIDEDTKFDYFMSPWEAKDYGIVDSVIDE 250
TGKP + ED + D FMS EAK YG+VD V DE
Sbjct: 61 TGKPFWVVSEDMERDVFMSADEAKAYGLVDIVGDE 95
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,459,850
Number of extensions: 331573
Number of successful extensions: 756
Number of sequences better than 1.0e-10: 14
Number of HSP's gapped: 748
Number of HSP's successfully gapped: 14
Length of query: 314
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 213
Effective length of database: 11,762,187
Effective search space: 2505345831
Effective search space used: 2505345831
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)