Os06g0136800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase S14, ClpP family protein.
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Os06g0136800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase S14, ClpP family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.47 | 0.327 | 12 | 0.0498 | 1.34 | 0.913 | 0.146 | -0.104 | -0.137 | 22.4 | 23.82 | 264 | -- | -- |
| 48.48 | 0.324 | 12 | 0.0637 | 1.34 | 0.904 | 0.142 | -- | -0.133 | 22.4 | 23.83 | 263 | -- | -- |
| 48.55 | 0.325 | 12 | 0.0409 | 1.34 | 0.916 | -- | -0.121 | -0.139 | 22.4 | 23.86 | 265 | -- | -- |
| 48.56 | 0.325 | 12 | 0.0605 | 1.34 | 0.904 | -- | -- | -0.132 | 22.4 | 23.84 | 265 | -- | -- |
| 126.51 | 0.524 | 12 | -0.249 | -- | 1.57 | -- | -0.109 | -0.356 | -- | 21.61 | 653 | -- | -- |
| 62.4 | 0.37 | 12 | 0.24 | 1.46 | -- | 0.277 | -- | -0.0215 | 21.3 | -- | -- | -- | -- |
| 62.67 | 0.371 | 12 | 0.23 | 1.45 | -- | -- | -- | -0.0219 | 21.3 | -- | -- | -- | -- |
| 122.16 | 0.515 | 12 | -0.0962 | -- | 1.51 | -- | -- | -0.197 | -- | 24.1 | 686 | -- | -- |
| 48.65 | 0.325 | 12 | -- | 1.34 | 0.92 | -- | -- | -0.142 | 22.4 | 23.8 | 266 | -- | -- |
| 185.79 | 0.637 | 12 | 0.236 | -- | -- | -- | -- | -0.0281 | -- | -- | -- | -- | -- |
| 64.06 | 0.374 | 12 | -- | 1.45 | -- | -- | -- | -0.0475 | 21.3 | -- | -- | -- | -- |
| 122.33 | 0.515 | 12 | -- | -- | 1.48 | -- | -- | -0.177 | -- | 24.1 | 683 | -- | -- |
| 187.27 | 0.639 | 12 | -- | -- | -- | -- | -- | -0.0543 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.07 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 9 |
| 9 | 46.00 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 10 |
| 10 | 46.02 | temperature | 25 | 270 | > th | dose dependent | sin | 2 | NA |
| 14 | 46.17 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 18 | 46.20 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 15 |
| 20 | 46.24 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 13 |
| 21 | 46.25 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 49 | 46.52 | temperature | 25 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 90 | 46.83 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 5 |
| 109 | 47.18 | temperature | 25 | 90 | > th | dose dependent | sin | 22 | NA |
| 127 | 47.31 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 3 |
| 228 | 47.90 | temperature | 20 | 720 | > th | dose dependent | rect. | 9 | 2 |
| 240 | 47.97 | temperature | 30 | 270 | < th | dose dependent | sin | 22 | NA |
| 344 | 48.43 | temperature | 25 | 270 | > th | dose independent | sin | 22 | NA |
| 358 | 48.50 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 8 |
| 378 | 48.61 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 5 |
| 393 | 48.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 16 |
| 424 | 48.77 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 440 | 48.79 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 559 | 49.00 | temperature | 25 | 720 | > th | dose independent | sin | 2 | NA |
| 672 | 49.34 | temperature | 25 | 270 | < th | dose independent | sin | 22 | NA |
| 688 | 49.38 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 12 |
| 709 | 49.48 | temperature | 25 | 720 | < th | dose independent | sin | 2 | NA |
| 735 | 49.57 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 11 |
| 745 | 49.59 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 9 |
| 806 | 49.75 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 13 |
| 810 | 49.76 | temperature | 25 | 270 | < th | dose independent | rect. | 5 | 16 |