Os04g0525600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp).
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Os04g0525600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.79 | 0.381 | 10.7 | 0.744 | 1.58 | -0.248 | 0.879 | -0.976 | -0.0841 | 19.5 | 17.76 | 10 | -- | -- |
| 70.45 | 0.391 | 10.7 | 0.779 | 1.6 | -0.231 | 0.375 | -- | -0.0668 | 19.3 | 20.59 | 10 | -- | -- |
| 67.57 | 0.383 | 10.7 | 0.736 | 1.58 | -0.239 | -- | -0.736 | -0.0863 | 19.5 | 17.76 | 10 | -- | -- |
| 70.4 | 0.391 | 10.7 | 0.771 | 1.59 | -0.246 | -- | -- | -0.0786 | 19.5 | 17.78 | 10 | -- | -- |
| 176.02 | 0.621 | 10.7 | 0.778 | -- | 0.408 | -- | -0.417 | -0.103 | -- | 0.7999 | 40 | -- | -- |
| 72.43 | 0.399 | 10.7 | 0.8 | 1.53 | -- | 0.483 | -- | -0.083 | 18.9 | -- | -- | -- | -- |
| 73.02 | 0.4 | 10.7 | 0.79 | 1.53 | -- | -- | -- | -0.0821 | 19 | -- | -- | -- | -- |
| 121.87 | 0.514 | 10.7 | 0.933 | -- | -1.39 | -- | -- | -0.209 | -- | 19.78 | 749 | -- | -- |
| 86.63 | 0.433 | 10.7 | -- | 1.61 | -0.24 | -- | -- | -0.13 | 19.4 | 17.09 | 10 | -- | -- |
| 195.68 | 0.654 | 10.7 | 0.759 | -- | -- | -- | -- | -0.111 | -- | -- | -- | -- | -- |
| 89.48 | 0.442 | 10.7 | -- | 1.52 | -- | -- | -- | -0.17 | 19 | -- | -- | -- | -- |
| 97.95 | 0.461 | 10.6 | -- | -- | -1.89 | -- | -- | -0.133 | -- | 0.1989 | 844 | -- | -- |
| 210.86 | 0.678 | 10.7 | -- | -- | -- | -- | -- | -0.195 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.26 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 2 | 57.44 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 3 | 57.56 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 7 | 58.34 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 21 | 58.97 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 59 | 59.99 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 11 |
| 77 | 60.33 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 4 | 15 |
| 88 | 60.44 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 10 |
| 91 | 60.46 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 97 | 60.51 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 19 |
| 102 | 60.60 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 12 |
| 126 | 60.77 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 10 |
| 131 | 60.82 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 6 |
| 138 | 60.85 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 2 |
| 139 | 60.85 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 148 | 60.90 | wind | 7.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 165 | 61.02 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 184 | 61.14 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 8 |
| 225 | 61.37 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 4 |
| 242 | 61.53 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 4 | 4 |
| 245 | 61.57 | wind | 7.0 | 10 | < th | dose dependent | rect. | 4 | 4 |
| 254 | 61.62 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 275 | 61.73 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 282 | 61.76 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 22 |
| 283 | 61.76 | temperature | 10.0 | 90 | > th | dose dependent | sin | 2 | NA |
| 288 | 61.78 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 289 | 61.78 | wind | 7.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 292 | 61.81 | temperature | 25.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 299 | 61.82 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 5 |
| 301 | 61.82 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 315 | 61.86 | radiation | 30.0 | 10 | < th | dose independent | rect. | 4 | 4 |
| 324 | 61.90 | temperature | 15.0 | 10 | > th | dose independent | rect. | 8 | 20 |
| 335 | 61.94 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 337 | 61.94 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 341 | 61.95 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 344 | 61.95 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 347 | 61.95 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 348 | 61.95 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 353 | 61.95 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 4 | 4 |
| 355 | 61.95 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 22 |
| 358 | 61.95 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 4 | 4 |
| 365 | 61.97 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 375 | 61.99 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 381 | 62.01 | wind | 5.0 | 10 | < th | dose independent | rect. | 4 | 4 |
| 382 | 62.01 | humidity | 70.0 | 10 | > th | dose independent | rect. | 4 | 4 |
| 389 | 62.03 | humidity | 70.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 403 | 62.08 | temperature | 10.0 | 10 | > th | dose dependent | sin | 1 | NA |
| 413 | 62.11 | temperature | 10.0 | 10 | > th | dose independent | rect. | 4 | 4 |
| 415 | 62.11 | temperature | 30.0 | 10 | < th | dose independent | rect. | 4 | 4 |
| 416 | 62.11 | humidity | 50.0 | 10 | > th | dose independent | rect. | 4 | 4 |
| 418 | 62.11 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 4 | 4 |
| 419 | 62.11 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 4 | 4 |
| 426 | 62.12 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 19 |
| 427 | 62.12 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 22 |
| 429 | 62.12 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 430 | 62.12 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 433 | 62.13 | wind | 9.0 | 10 | < th | dose independent | rect. | 8 | 20 |
| 438 | 62.15 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 462 | 62.23 | radiation | 30.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 470 | 62.25 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 19 |
| 507 | 62.33 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 510 | 62.33 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 512 | 62.33 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 513 | 62.33 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 514 | 62.33 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 525 | 62.35 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 532 | 62.37 | temperature | 30.0 | 270 | < th | dose independent | rect. | 13 | 17 |
| 537 | 62.38 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 18 |
| 551 | 62.41 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 19 | 7 |
| 619 | 62.55 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 632 | 62.57 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 639 | 62.60 | humidity | 90.0 | 720 | > th | dose independent | rect. | 22 | 1 |
| 641 | 62.60 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 4 | 4 |
| 672 | 62.69 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 680 | 62.71 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 684 | 62.72 | temperature | 30.0 | 90 | < th | dose dependent | sin | 2 | NA |
| 712 | 62.77 | radiation | 10.0 | 270 | < th | dose independent | rect. | 1 | 7 |
| 715 | 62.77 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 20 |
| 719 | 62.77 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 20 |
| 727 | 62.79 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 13 |
| 735 | 62.80 | temperature | 25.0 | 270 | < th | dose independent | sin | 5 | NA |
| 740 | 62.80 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 20 | 3 |
| 746 | 62.81 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 20 |
| 769 | 62.86 | temperature | 25.0 | 270 | > th | dose independent | sin | 5 | NA |
| 790 | 62.88 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 799 | 62.90 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 4 | 4 |
| 801 | 62.91 | radiation | 40.0 | 270 | < th | dose independent | rect. | 11 | 19 |
| 812 | 62.93 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 813 | 62.93 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 814 | 62.93 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 4 | 4 |
| 819 | 62.94 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 823 | 62.94 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 12 |
| 888 | 63.01 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 907 | 63.02 | temperature | 25.0 | 90 | > th | dose dependent | sin | 5 | NA |
| 916 | 63.03 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 4 | 19 |
| 924 | 63.05 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 4 | 4 |
| 942 | 63.07 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 970 | 63.12 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 980 | 63.14 | radiation | 40.0 | 270 | < th | dose independent | rect. | 10 | 21 |