Os02g0634500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp).
FiT-DB / Search/ Help/ Sample detail
|
Os02g0634500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.38 | 0.323 | 16.8 | 0.863 | 0.854 | -0.623 | -0.131 | 0.835 | 0.0638 | 18.7 | 19.22 | 4262 | -- | -- |
| 48.42 | 0.324 | 16.8 | 0.689 | 0.865 | -0.613 | -0.204 | -- | 0.0633 | 18.7 | 16.84 | 7107 | -- | -- |
| 47.42 | 0.321 | 16.8 | 0.863 | 0.854 | -0.626 | -- | 0.818 | 0.0649 | 18.7 | 18.96 | 4277 | -- | -- |
| 47.84 | 0.322 | 16.8 | 0.657 | 0.845 | -0.659 | -- | -- | 0.00587 | 18.7 | 17.23 | 4278 | -- | -- |
| 85.36 | 0.43 | 16.7 | 0.84 | -- | -0.655 | -- | 0.767 | 0.0516 | -- | 19.06 | 4265 | -- | -- |
| 57.12 | 0.354 | 16.8 | 0.35 | 0.869 | -- | -0.144 | -- | -0.129 | 18.5 | -- | -- | -- | -- |
| 57.17 | 0.354 | 16.8 | 0.352 | 0.868 | -- | -- | -- | -0.129 | 18.5 | -- | -- | -- | -- |
| 85.58 | 0.431 | 16.8 | 0.649 | -- | -0.673 | -- | -- | -0.026 | -- | 16.93 | 4262 | -- | -- |
| 55.4 | 0.347 | 16.8 | -- | 0.845 | -0.395 | -- | -- | -0.0933 | 18.7 | 20 | 1266 | -- | -- |
| 96.41 | 0.459 | 16.8 | 0.331 | -- | -- | -- | -- | -0.147 | -- | -- | -- | -- | -- |
| 60.44 | 0.364 | 16.8 | -- | 0.864 | -- | -- | -- | -0.169 | 18.5 | -- | -- | -- | -- |
| 92.64 | 0.448 | 16.8 | -- | -- | -0.436 | -- | -- | -0.0992 | -- | 20.2 | 1341 | -- | -- |
| 99.3 | 0.465 | 16.8 | -- | -- | -- | -- | -- | -0.184 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.02 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 2 | 46.06 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 26 | 46.33 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 28 | 46.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 10 |
| 33 | 46.38 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 34 | 46.39 | temperature | 10 | 720 | > th | dose dependent | sin | 11 | NA |
| 45 | 46.42 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 104 | 46.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 131 | 46.61 | temperature | 30 | 720 | < th | dose dependent | sin | 12 | NA |
| 158 | 46.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 17 |
| 186 | 46.67 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 322 | 46.81 | temperature | 10 | 270 | > th | dose dependent | rect. | 1 | 22 |
| 342 | 46.84 | temperature | 30 | 1440 | < th | dose dependent | sin | 9 | NA |
| 444 | 46.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 570 | 47.03 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 571 | 47.03 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 581 | 47.04 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 634 | 47.08 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 21 |
| 653 | 47.10 | humidity | 90 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 746 | 47.18 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 784 | 47.21 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 785 | 47.21 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 795 | 47.22 | temperature | 25 | 1440 | < th | dose independent | rect. | 18 | 19 |
| 817 | 47.23 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 9 |
| 856 | 47.26 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 870 | 47.27 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 873 | 47.27 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 21 |
| 874 | 47.27 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 893 | 47.28 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 971 | 47.31 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 2 |