Os01g0271400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase S14, ClpP family protein.
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Os01g0271400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase S14, ClpP family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.96 | 0.239 | 12.7 | 0.864 | 1.24 | -0.544 | -0.0373 | -0.0821 | -0.184 | 20.7 | 13.43 | 3468 | -- | -- |
| 25.96 | 0.237 | 12.7 | 0.877 | 1.24 | -0.542 | -0.051 | -- | -0.18 | 20.7 | 13.38 | 3468 | -- | -- |
| 25.96 | 0.237 | 12.7 | 0.865 | 1.24 | -0.544 | -- | -0.087 | -0.184 | 20.7 | 13.42 | 3475 | -- | -- |
| 25.97 | 0.237 | 12.7 | 0.883 | 1.24 | -0.541 | -- | -- | -0.178 | 20.7 | 13.29 | 3473 | -- | -- |
| 108.8 | 0.488 | 12.7 | 0.8 | -- | -0.596 | -- | 0.255 | -0.205 | -- | 13.42 | 3475 | -- | -- |
| 31.04 | 0.261 | 12.7 | 0.658 | 1.21 | -- | -0.0637 | -- | -0.283 | 20.7 | -- | -- | -- | -- |
| 31.05 | 0.261 | 12.7 | 0.66 | 1.21 | -- | -- | -- | -0.283 | 20.7 | -- | -- | -- | -- |
| 108.86 | 0.488 | 12.7 | 0.765 | -- | -0.591 | -- | -- | -0.215 | -- | 14.22 | 5794 | -- | -- |
| 42.08 | 0.302 | 12.8 | -- | 1.22 | -0.151 | -- | -- | -0.333 | 20.7 | 12.1 | 2024 | -- | -- |
| 113.9 | 0.499 | 12.7 | 0.657 | -- | -- | -- | -- | -0.293 | -- | -- | -- | -- | -- |
| 42.54 | 0.305 | 12.8 | -- | 1.21 | -- | -- | -- | -0.357 | 20.7 | -- | -- | -- | -- |
| 113.69 | 0.497 | 12.8 | -- | -- | 0.828 | -- | -- | -0.467 | -- | 6.343 | 622 | -- | -- |
| 125.31 | 0.522 | 12.7 | -- | -- | -- | -- | -- | -0.366 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.55 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 5 | 24.11 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 20 | 13 |
| 6 | 24.15 | temperature | 30.0 | 10 | < th | dose dependent | sin | 10 | NA |
| 7 | 24.22 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 9 | 24.26 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 6 |
| 10 | 24.30 | temperature | 10.0 | 10 | > th | dose dependent | sin | 10 | NA |
| 24 | 24.50 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 18 | 15 |
| 26 | 24.51 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 51 | 24.71 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 21 | 8 |
| 63 | 24.78 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 16 | 17 |
| 64 | 24.79 | temperature | 20.0 | 10 | > th | dose independent | rect. | 16 | 17 |
| 73 | 24.83 | temperature | 20.0 | 10 | > th | dose independent | rect. | 18 | 15 |
| 76 | 24.84 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 84 | 24.89 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 98 | 24.92 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 22 | 8 |
| 134 | 25.07 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 171 | 25.19 | temperature | 25.0 | 720 | > th | dose independent | rect. | 20 | 2 |
| 202 | 25.27 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 12 |
| 223 | 25.32 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 18 | 12 |
| 243 | 25.40 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 265 | 25.47 | wind | 5.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 276 | 25.49 | temperature | 20.0 | 90 | > th | dose independent | rect. | 4 | 19 |
| 287 | 25.50 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 12 | 5 |
| 290 | 25.50 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 291 | 25.50 | wind | 7.0 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 310 | 25.54 | wind | 5.0 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 338 | 25.59 | temperature | 10.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 339 | 25.59 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 24 | 6 |
| 364 | 25.63 | wind | 5.0 | 43200 | < th | dose independent | rect. | 7 | 7 |
| 366 | 25.63 | wind | 5.0 | 43200 | < th | dose independent | rect. | 23 | 16 |
| 371 | 25.63 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 18 | 12 |
| 375 | 25.64 | wind | 5.0 | 43200 | > th | dose independent | rect. | 23 | 16 |
| 384 | 25.64 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 22 | 12 |
| 397 | 25.66 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 405 | 25.66 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 20 | 14 |
| 409 | 25.67 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 12 | 5 |
| 412 | 25.67 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 19 |
| 415 | 25.67 | humidity | 50.0 | 4320 | < th | dose independent | rect. | 16 | 22 |
| 416 | 25.67 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 2 | 4 |
| 424 | 25.67 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 18 | 12 |
| 428 | 25.68 | wind | 5.0 | 43200 | > th | dose independent | rect. | 6 | 8 |
| 430 | 25.68 | wind | 5.0 | 43200 | > th | dose independent | rect. | 4 | 11 |
| 431 | 25.68 | wind | 5.0 | 43200 | < th | dose independent | rect. | 4 | 11 |
| 453 | 25.69 | wind | 5.0 | 43200 | > th | dose independent | rect. | 2 | 13 |
| 502 | 25.72 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 503 | 25.72 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 518 | 25.73 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 4 | 2 |
| 544 | 25.74 | wind | 5.0 | 43200 | > th | dose independent | sin | 4 | NA |
| 545 | 25.74 | wind | 5.0 | 43200 | < th | dose independent | sin | 4 | NA |
| 546 | 25.74 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 574 | 25.74 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 580 | 25.75 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 581 | 25.75 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 602 | 25.76 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 608 | 25.77 | wind | 1.0 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 637 | 25.79 | temperature | 30.0 | 720 | < th | dose dependent | sin | 15 | NA |
| 649 | 25.80 | wind | 1.0 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 687 | 25.81 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 12 | 19 |
| 688 | 25.81 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 11 | 20 |
| 695 | 25.82 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 713 | 25.83 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 714 | 25.83 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 738 | 25.83 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 18 | 16 |
| 740 | 25.84 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 741 | 25.84 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 829 | 25.87 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 15 | 16 |
| 833 | 25.87 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 19 |
| 918 | 25.91 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 919 | 25.91 | temperature | 20.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 941 | 25.92 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 950 | 25.92 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 951 | 25.92 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 957 | 25.92 | temperature | 30.0 | 4320 | > th | dose dependent | rect. | 14 | 5 |