Os05g0592100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase S14, ClpP family protein.
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Os05g0592100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase S14, ClpP family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.02 | 0.235 | 15.1 | 0.443 | 0.617 | -0.703 | -0.242 | 0.531 | 0.0527 | 21.6 | 31.3 | 98 | -- | -- |
| 25.33 | 0.234 | 15.1 | 0.501 | 0.592 | -0.706 | -0.236 | -- | 0.0864 | 21.5 | 31.16 | 122 | -- | -- |
| 25.19 | 0.234 | 15.1 | 0.442 | 0.603 | -0.703 | -- | 0.476 | 0.0518 | 21.7 | 30.99 | 117 | -- | -- |
| 25.31 | 0.234 | 15.1 | 0.534 | 0.6 | -0.69 | -- | -- | 0.0659 | 21.7 | 30.2 | 137 | -- | -- |
| 35.51 | 0.278 | 15.1 | 0.359 | -- | -1.07 | -- | 0.482 | 0.00993 | -- | 46.01 | 625 | -- | -- |
| 31.39 | 0.263 | 15 | 0.694 | 0.623 | -- | -0.308 | -- | 0.198 | 20.2 | -- | -- | -- | -- |
| 31.68 | 0.264 | 15 | 0.702 | 0.622 | -- | -- | -- | 0.198 | 20.3 | -- | -- | -- | -- |
| 35.68 | 0.278 | 15.1 | 0.445 | -- | -1.06 | -- | -- | 0.0332 | -- | 48.35 | 629 | -- | -- |
| 31.9 | 0.263 | 15.1 | -- | 0.61 | -0.932 | -- | -- | -0.035 | 22.2 | 30.01 | 148 | -- | -- |
| 53.16 | 0.341 | 15 | 0.698 | -- | -- | -- | -- | 0.191 | -- | -- | -- | -- | -- |
| 44.68 | 0.313 | 15.1 | -- | 0.619 | -- | -- | -- | 0.119 | 20.4 | -- | -- | -- | -- |
| 40.25 | 0.295 | 15.1 | -- | -- | -1.23 | -- | -- | -0.0368 | -- | 32.31 | 657 | -- | -- |
| 66.02 | 0.379 | 15 | -- | -- | -- | -- | -- | 0.113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 2 | 23.21 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 15 | 23.54 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 17 |
| 17 | 23.55 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 21 | 23.60 | temperature | 30 | 10 | < th | dose dependent | sin | 0 | NA |
| 28 | 23.66 | temperature | 10 | 90 | > th | dose dependent | sin | 1 | NA |
| 31 | 23.69 | temperature | 10 | 10 | > th | dose dependent | sin | 0 | NA |
| 34 | 23.72 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 53 | 23.83 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 73 | 23.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 114 | 24.16 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 10 |
| 129 | 24.23 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 160 | 24.35 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 161 | 24.36 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 173 | 24.37 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 190 | 24.45 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 192 | 24.45 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 16 |
| 201 | 24.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 214 | 24.50 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 216 | 24.50 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 219 | 24.51 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 231 | 24.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 241 | 24.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 258 | 24.55 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 259 | 24.56 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 277 | 24.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 6 |
| 313 | 24.64 | radiation | 1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 316 | 24.65 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 318 | 24.65 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 329 | 24.66 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 18 |
| 362 | 24.68 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 16 |
| 400 | 24.74 | radiation | 1 | 1440 | < th | dose independent | sin | 22 | NA |
| 411 | 24.75 | humidity | 80 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 478 | 24.80 | radiation | 1 | 1440 | > th | dose independent | sin | 22 | NA |
| 494 | 24.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 17 |
| 549 | 24.86 | temperature | 25 | 270 | > th | dose independent | sin | 4 | NA |
| 594 | 24.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 596 | 24.91 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 17 |
| 607 | 24.92 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 613 | 24.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 8 |
| 630 | 24.94 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 17 |
| 667 | 24.96 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 687 | 24.98 | temperature | 25 | 270 | < th | dose independent | sin | 5 | NA |
| 699 | 24.98 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 757 | 25.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 776 | 25.04 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 788 | 25.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 17 |
| 835 | 25.08 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 845 | 25.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 848 | 25.09 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 895 | 25.11 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 915 | 25.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 923 | 25.13 | radiation | 1 | 1440 | < th | dose dependent | rect. | 21 | 21 |
| 928 | 25.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 968 | 25.16 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 9 |
| 995 | 25.17 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |