BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0577100 Os05g0577100|Os05g0577100
(297 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0577100 Protein of unknown function DUF617, plant fami... 411 e-115
Os01g0642600 Protein of unknown function DUF617, plant fami... 320 1e-87
Os02g0709600 Protein of unknown function DUF617, plant fami... 164 6e-41
Os01g0806400 Protein of unknown function DUF617, plant fami... 133 1e-31
Os08g0476600 Protein of unknown function DUF617, plant fami... 132 2e-31
Os01g0268700 129 2e-30
Os09g0463600 Protein of unknown function DUF617, plant fami... 127 1e-29
Os05g0280150 113 2e-25
Os08g0171800 Protein of unknown function DUF617, plant fami... 108 4e-24
Os04g0638800 Protein of unknown function DUF617, plant fami... 95 6e-20
Os03g0733266 73 2e-13
>Os05g0577100 Protein of unknown function DUF617, plant family protein
Length = 297
Score = 411 bits (1057), Expect = e-115, Method: Compositional matrix adjust.
Identities = 214/297 (72%), Positives = 214/297 (72%)
Query: 1 MRTITARNPHDSLSFSRRHFKWPVLGKSYSHGATRGXXXXXXXXXXXXXXXXXTMAFSSV 60
MRTITARNPHDSLSFSRRHFKWPVLGKSYSHGATRG TMAFSSV
Sbjct: 1 MRTITARNPHDSLSFSRRHFKWPVLGKSYSHGATRGEEDYMKSSEAEEEEDEATMAFSSV 60
Query: 61 CPSFHSEDFVSXXXXXXXXXXXXXXXXXXXXXVRXXXXXXXXXXXXXXXGRHRQVGLGAR 120
CPSFHSEDFVS VR GRHRQVGLGAR
Sbjct: 61 CPSFHSEDFVSPPKKPPRQQHPQQQHPPQRRKVRTAVSRLRSALAAAVTGRHRQVGLGAR 120
Query: 121 LTGTLYGHRRGHVHLAFQLDXXXXXXXXXXXXXXXXXXVREMASGLVRIALECERAKGGP 180
LTGTLYGHRRGHVHLAFQLD VREMASGLVRIALECERAKGGP
Sbjct: 121 LTGTLYGHRRGHVHLAFQLDPRACPALLLELAAPTAALVREMASGLVRIALECERAKGGP 180
Query: 181 APALPTATGGGKRLLEETVWRAYCNGKSCGYAVRRECGAADWRVLRALEPVSMGAGVIPA 240
APALPTATGGGKRLLEETVWRAYCNGKSCGYAVRRECGAADWRVLRALEPVSMGAGVIPA
Sbjct: 181 APALPTATGGGKRLLEETVWRAYCNGKSCGYAVRRECGAADWRVLRALEPVSMGAGVIPA 240
Query: 241 ASCGGGEGDVMYMRARFERVVGSRDSEAFYMMNPDXXXXXXXXXXXXPELSVYLLRV 297
ASCGGGEGDVMYMRARFERVVGSRDSEAFYMMNPD PELSVYLLRV
Sbjct: 241 ASCGGGEGDVMYMRARFERVVGSRDSEAFYMMNPDSTSTSSNSNSGGPELSVYLLRV 297
>Os01g0642600 Protein of unknown function DUF617, plant family protein
Length = 303
Score = 320 bits (819), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 184/307 (59%), Positives = 197/307 (64%), Gaps = 20/307 (6%)
Query: 6 ARNPHDS-LSFSRRHFKWPVLGKSYSHGATRGXXXXXXXXXXXXXXXXXTMAFSSVCPSF 64
AR+PH+S SFSRRHFKWPVLGKS SHGA+ TMAFSS CPSF
Sbjct: 2 ARSPHESSFSFSRRHFKWPVLGKSSSHGASNAGEDDFIKAEDDEEA---TMAFSSTCPSF 58
Query: 65 HSEDFVSXXXXXXXXXXXXXXXXXXXXXVRXXXXXXXXXXXXXXXGRHRQVGLGARLTGT 124
HSEDFVS R GRHRQVGLGARLTGT
Sbjct: 59 HSEDFVSPPPCKPLKQQQQQQPQQQRRKGRTAVSRLRTALAAALAGRHRQVGLGARLTGT 118
Query: 125 LYGHRRGHVHLAFQLDXXXXXXXXXXXXXXXXXXVREMASGLVRIALECERAKGG----- 179
LYGHRRGHVHLAFQ+D VREMASGLVRIALECERAKGG
Sbjct: 119 LYGHRRGHVHLAFQVDPRACPALLLELAAPTASLVREMASGLVRIALECERAKGGGACAF 178
Query: 180 ---------PAPALPTATGGGKRLLEETVWRAYCNGKSCGYAVRRECGAADWRVLRALEP 230
+ + +++ GG++L+EETVWRAYCNG+SCGYAVRRECGAADWRVLRALEP
Sbjct: 179 PTAAAAPSSSSSSSSSSSAGGRKLVEETVWRAYCNGRSCGYAVRRECGAADWRVLRALEP 238
Query: 231 VSMGAGVIPAASCGGGEGDVMYMRARFERVVGSRDSEAFYMMNPDXXXXXXXXXXXXPEL 290
VSMGAGVIPAA CGGGEGDVMYMRARFERVVGSRDSEAFYMMNPD PEL
Sbjct: 239 VSMGAGVIPAA-CGGGEGDVMYMRARFERVVGSRDSEAFYMMNPD-CGGSGSNNNGGPEL 296
Query: 291 SVYLLRV 297
SVYLLRV
Sbjct: 297 SVYLLRV 303
>Os02g0709600 Protein of unknown function DUF617, plant family protein
Length = 247
Score = 164 bits (416), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 92/144 (63%), Positives = 104/144 (72%), Gaps = 22/144 (15%)
Query: 159 VREMASGLVRIALECERAKGGPAPALPTATGGGKR--LLEETVWRAYCNGKSCGYAVRRE 216
VREM+SGLVR+ALECE+ P G KR LLEE WRAYCNG+ CG+AVRRE
Sbjct: 121 VREMSSGLVRLALECEKQPINP---------GEKRRALLEEPTWRAYCNGRKCGFAVRRE 171
Query: 217 CGAADWRVLRALEPVSMGAGVIP---AASCGGGEGDVMYMRARFERVVGSRDSEAFYMMN 273
CGA +WRVL A+EPVS+GAGV+P AA+ EGD+MYMRARFERVVGSRDSEAFYMMN
Sbjct: 172 CGADEWRVLGAVEPVSVGAGVLPDDAAAAAAAEEGDLMYMRARFERVVGSRDSEAFYMMN 231
Query: 274 PDXXXXXXXXXXXXPELSVYLLRV 297
PD PELS+YLLRV
Sbjct: 232 PD--------GSGGPELSIYLLRV 247
>Os01g0806400 Protein of unknown function DUF617, plant family protein
Length = 272
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 103/186 (55%), Gaps = 20/186 (10%)
Query: 119 ARLTGTLYGHRRGHVHLAFQLDXXXXXXXXXXXXXXXXXXVREMASGLVRIALECERAKG 178
+R TGTL+G+R+ V LA Q ++EM + +R+ALECE+
Sbjct: 100 SRTTGTLFGYRKARVTLAVQETPGSVPILLLELAMQTGRFMQEMGAEHLRVALECEKKPP 159
Query: 179 GPAPALPTATGGGKRLLEETVWRAYCNGKSCGYAVRRECGAADWRVLRALEPVSMGAGVI 238
G + G RLL+E +W AY NG+ GYA+RRE D V++ L VS+GAGV+
Sbjct: 160 GAGAGI-----GRTRLLDEPLWTAYVNGRKIGYAMRREPTEGDLTVMQLLRTVSVGAGVL 214
Query: 239 PAASCGG-------GEGDVMYMRARFERVVGSRDSEAFYMMNPDXXXXXXXXXXXXPELS 291
P GG GD+ YMRARF+RVVGSRDSE+FYM+NPD PELS
Sbjct: 215 PTDVMGGDAGAEVQDAGDLAYMRARFDRVVGSRDSESFYMLNPD--------GNNGPELS 266
Query: 292 VYLLRV 297
++ +R+
Sbjct: 267 IFFIRI 272
>Os08g0476600 Protein of unknown function DUF617, plant family protein
Length = 1589
Score = 132 bits (333), Expect = 2e-31, Method: Composition-based stats.
Identities = 78/185 (42%), Positives = 99/185 (53%), Gaps = 22/185 (11%)
Query: 122 TGTLYGHRRGHVHLAFQLDXXXXXXXXXXXXXXXXXXVREMASGLVRIALECERAKGGPA 181
T TL+GHRRG + LA D REMA+G V++ALE +
Sbjct: 80 TVTLFGHRRGRLSLAIHEDTRAPPAFLIELPMLASAMHREMATGTVKLALESD------- 132
Query: 182 PALPTATGGGKRLLEETVWRAYCNGKSCGYAVRRECGAADWR-VLRALEPVSMGAGVIPA 240
+RLLEE VW +CNG+ GYA+RR+ + D R VLR L VSMGAGV+P
Sbjct: 133 -----TRSARRRLLEEYVWAVFCNGRKAGYAIRRKDASDDDRHVLRLLRGVSMGAGVLPP 187
Query: 241 ASC-----GGGEGDVMYMRARFERVVGSRDSEAFYMMNPDXXXXXXXXXXX----XPELS 291
G +G++ YMRAR ERVVGS+DSEAFYM+NPD PELS
Sbjct: 188 PPADRRGGAGPDGELTYMRARVERVVGSKDSEAFYMINPDDGSDNGGAAGRDRECAPELS 247
Query: 292 VYLLR 296
++L+R
Sbjct: 248 IFLVR 252
>Os01g0268700
Length = 543
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/193 (38%), Positives = 104/193 (53%), Gaps = 30/193 (15%)
Query: 120 RLTGTLYGHRRGHVHLAFQLDXXXXXXXXXXXXXXXXXXVREM-ASGLVRIALECERAK- 177
R TGTLYGHRR + +AF ++++ A+G+VR+ LEC++ +
Sbjct: 366 RTTGTLYGHRRARITIAFHDSPGSPPALLLDIAVPTAKFIQDVSAAGMVRVTLECDKQQH 425
Query: 178 ---------GGPAPALPTATGGGKRLLEETVWRAYCNGKSCGYAVRRECGAADWRVLRAL 228
G P P +RLL+E VW A NG+S GYA RRE AD RV+R L
Sbjct: 426 QPPPHAHPPGDPLPP--------RRLLDEPVWSAEVNGESVGYAARREATEADERVMRLL 477
Query: 229 EPVSMGAGVIPA----ASCGGGEGDVMYMRARFERVVGSRDSEAFYMMNPDXXXXXXXXX 284
+SMGAGV+PA A +G+V YMRA F+RVVGS+D+E +YM NP+
Sbjct: 478 HAMSMGAGVLPAVAADAPTSAADGEVTYMRAHFDRVVGSKDAETYYMHNPE-------GC 530
Query: 285 XXXPELSVYLLRV 297
PEL+++ +R
Sbjct: 531 ATGPELTIFFIRT 543
>Os09g0463600 Protein of unknown function DUF617, plant family protein
Length = 244
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 80/198 (40%), Positives = 108/198 (54%), Gaps = 22/198 (11%)
Query: 110 GRHRQVGLGARLTG-TLYGHRRGHVHLAFQLDXXXXXXXXXXXXXXXXXXVREMASGLVR 168
GRH + L T TL+GHRRG V LA D +E++SG+V+
Sbjct: 58 GRHNRALLADHATTVTLFGHRRGRVSLAIHEDTRAPPVFLIELPMLTSALHKEISSGVVK 117
Query: 169 IALECERAKGGPAPALPTATGGGKRLLEETVWRAYCNGKSCGYAVRRECGAADWR-VLRA 227
+ALE + +RL+EE VW YCNG+ GY++RR+ + D R VLR
Sbjct: 118 LALESD------------TRSARRRLVEEYVWAVYCNGRKAGYSIRRKEASDDERHVLRL 165
Query: 228 LEPVSMGAGVIPAAS------CGGGEGDVMYMRARFERVVGSRDSEAFYMMNPDX--XXX 279
L VSMGAGV+PAA G +G++ Y+RAR ERVVGS+DSEAFYM+NP+
Sbjct: 166 LRGVSMGAGVLPAAPEKEGGVPAGPDGELTYVRARVERVVGSKDSEAFYMINPNEGGVGG 225
Query: 280 XXXXXXXXPELSVYLLRV 297
PELS++L+R+
Sbjct: 226 DSAGDGSAPELSIFLVRM 243
>Os05g0280150
Length = 412
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 94/187 (50%), Gaps = 19/187 (10%)
Query: 121 LTGTLYGHRRGHVHLAFQLDXXXXXXXXXXXXXXXXXXVREMASGLVRIALECERAKG-- 178
+ GT++G R GHV Q D EM SGL+RIALEC + G
Sbjct: 83 IVGTIFGRRSGHVTFCVQRDAAMPPPFLFELSVPMLSLAAEMGSGLLRIALECHHSSGKV 142
Query: 179 ------GPAPALPTATGGGKRLLEETVWRAYCNGKSCGYAVRRECGAADWRVLRALEPVS 232
G GGG R +VW+A CNG+ GYAVRR D RVL ++ +
Sbjct: 143 VVGAADGDTINNAGTGGGGSR----SVWKASCNGRDVGYAVRRRPTDQDCRVLESMRMTT 198
Query: 233 MGAGVIPAA--SCGGGEGDVMYMRARFERVVGSRDSEAFYMMNPDXXXXXXXXXXXXPEL 290
G GV+P+ S GG GDV+YMRA +ERVVGS+D+ +++++ P EL
Sbjct: 199 TGVGVLPSTGFSEDGGGGDVLYMRATYERVVGSKDAVSYHLITPGTASGSPQQ-----EL 253
Query: 291 SVYLLRV 297
SV+LLR
Sbjct: 254 SVFLLRT 260
>Os08g0171800 Protein of unknown function DUF617, plant family protein
Length = 315
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 96/195 (49%), Gaps = 28/195 (14%)
Query: 120 RLTGTLYGHRRGHVHLAFQLDXXXXXXXXXXXXXXXXXXVREMASGL-VRIALECERAKG 178
R+TGTL+GHR+G V LA Q +RE+A+ RI LE ER
Sbjct: 132 RVTGTLFGHRKGRVALALQETPRCLPTLVIELAIQTNALLRELANPAGARIVLETERR-- 189
Query: 179 GPAPALPTATGGGKR---LLEETVWRAYCNGKSCGYAVRRECGAADWRVLRALEPVSMGA 235
AP+ A G +R LL+ W +CNG+ G AVRRE D VL L PVSMGA
Sbjct: 190 --APSTDAAAGKHRRAPPLLDVAAWTMFCNGRKTGLAVRREATDDDLAVLETLRPVSMGA 247
Query: 236 GVIPAAS-------------CGGGEGDVMYMRARFERVVGSRDSEAFYMMNPDXXXXXXX 282
GV+PA++ + +V YMR F+ VGSRDSE+ YM+ P
Sbjct: 248 GVLPASNRSSSSSSQSPEKGAAAADDEVAYMRGCFDHFVGSRDSESLYMIAPQ------- 300
Query: 283 XXXXXPELSVYLLRV 297
PEL+++ +R+
Sbjct: 301 GGGTGPELAIFFVRL 315
>Os04g0638800 Protein of unknown function DUF617, plant family protein
Length = 301
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 91/187 (48%), Gaps = 17/187 (9%)
Query: 120 RLTGTLYGHRRGHVHLAFQLDXXXXXXXXXXXXXXXXXXVREMASGL-VRIALECERAKG 178
R+TGTL+G+R + L+ Q + +R++ + RI LE E+
Sbjct: 123 RMTGTLFGYRDARIALSLQDNPRCQPTLVVELALPTHALLRDLGTTAGARIVLESEKRAA 182
Query: 179 GPAPALPTATGGGKR-------LLEETVWRAYCNGKSCGYAVRRECGAADWRVLRALEPV 231
+ +LEE++W CNGK GYAVRR+ D VL L V
Sbjct: 183 DGGDGAGAGASSRREREQQDGWVLEESMWTMSCNGKKVGYAVRRDPTDDDIAVLETLWAV 242
Query: 232 SMGAGVIPAAS-CGGGEGDVMYMRARFERVVGSRDSEAFYMMNPDXXXXXXXXXXXXPEL 290
SMG GV+P S G +G++ YMR FE ++GSR+SE+ YM++P PEL
Sbjct: 243 SMGGGVLPGISDMDGKDGEMAYMRGSFEHIIGSRNSESLYMISP--------HGGDCPEL 294
Query: 291 SVYLLRV 297
+V+ +R+
Sbjct: 295 AVFFVRL 301
>Os03g0733266
Length = 231
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 17/108 (15%)
Query: 168 RIALECERAKGGPAPALPTATGGGKRLLEETVWRAYCNGKSCGYAVRR-ECGAADWRVLR 226
R+ LEC+R GG LLE W YCNG+ G+A RR E A+ VL
Sbjct: 121 RVVLECQR----------QWNNGGGALLESAKWLVYCNGRRVGFAARRGEASDAEGWVLE 170
Query: 227 ALEPVSMGAGVIPAASCGGGEGDVMYMRARFERVVGSRDSEAFYMMNP 274
L V+ GAG +P GG G V YMR RFER V S D+E+F++++P
Sbjct: 171 KLWAVTAGAGRLP-----GGAG-VEYMRGRFERTVASSDAESFHLVDP 212
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,155,853
Number of extensions: 307446
Number of successful extensions: 981
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 949
Number of HSP's successfully gapped: 11
Length of query: 297
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 197
Effective length of database: 11,814,401
Effective search space: 2327436997
Effective search space used: 2327436997
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)