FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0806400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF617, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.81 (0.056) R2 : 0.0987
β1 : -1.16 (0.205) R2dD : 0.0659 R2D : 0.0265
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.624 (0.12) R2dN8 : 0.0722 R2N8 : 0.0328
σ : 1.05
deviance : 505.59
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
474.55 1.02 3.76 -0.544 0.58 1.08 0.554 -5.94 -0.603 15.9 29.7 30 -- --
484.44 1.03 3.82 -1.08 0.591 0.515 0.858 -- -0.608 16 29.7 30 -- --
475.02 1.02 3.75 -0.53 0.593 1.03 -- -5.56 -0.58 15.7 29.69 30 -- --
485.2 1.03 3.81 -1.08 0.598 0.501 -- -- -0.585 15.6 29.61 29 -- --
490.97 1.03 3.75 -0.646 -- 0.742 -- -5.47 -0.592 -- 29.7 30 -- --
494.5 1.04 3.82 -1.15 0.418 -- 0.75 -- -0.617 16.5 -- -- -- --
495.94 1.04 3.82 -1.15 0.422 -- -- -- -0.613 16.1 -- -- -- --
502.13 1.05 3.81 -1.13 -- 0.26 -- -- -0.612 -- 29.61 29 -- --
515.42 1.06 3.78 -- 0.652 0.59 -- -- -0.462 15.6 29.61 29 -- --
505.59 1.05 3.81 -1.16 -- -- -- -- -0.624 -- -- -- -- --
530.5 1.08 3.79 -- 0.444 -- -- -- -0.485 16.1 -- -- -- --
535.61 1.08 3.78 -- -- 0.33 -- -- -0.485 -- 29.61 29 -- --
541.22 1.09 3.78 -- -- -- -- -- -0.495 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 463.06 temperature 15.0 30 > th dose dependent rect. 17 21
7 464.14 radiation 1.0 90 > th dose independent rect. 17 21
14 465.84 radiation 1.0 90 > th dose dependent rect. 14 2
26 467.25 radiation 20.0 90 > th dose independent rect. 14 2
27 467.28 humidity 70.0 90 < th dose independent rect. 14 2
34 468.55 radiation 10.0 90 > th dose dependent rect. 14 18
40 469.45 temperature 30.0 270 < th dose independent rect. 14 1
55 469.92 temperature 15.0 90 > th dose independent rect. 16 22
77 470.25 radiation 20.0 90 > th dose independent rect. 14 18
80 470.46 humidity 50.0 90 > th dose independent rect. 14 3
93 470.92 temperature 30.0 30 < th dose independent rect. 14 4
98 471.10 radiation 1.0 10 > th dose independent rect. 14 3
126 471.36 humidity 60.0 10 > th dose independent rect. 14 4
129 471.47 radiation 1.0 270 > th dose dependent rect. 16 18
131 471.55 humidity 90.0 30 < th dose dependent rect. 17 21
132 471.59 temperature 30.0 30 < th dose independent rect. 2 16
137 471.90 temperature 15.0 10 > th dose independent rect. 17 21
145 472.05 humidity 90.0 90 < th dose dependent rect. 14 2
169 472.22 humidity 90.0 10 < th dose dependent rect. 14 3
175 472.33 wind 1.0 90 > th dose dependent rect. 13 3
177 472.37 temperature 30.0 270 < th dose independent rect. 11 6
189 472.41 precipitation 0.1 270 < th dose independent rect. 16 19
191 472.41 temperature 10.0 90 > th dose dependent rect. 17 9
192 472.41 precipitation 0.1 270 < th dose dependent rect. 16 19
195 472.52 humidity 70.0 90 < th dose independent rect. 16 21
217 472.84 precipitation 0.1 1440 > th dose independent rect. 10 3
218 472.84 precipitation 0.1 1440 > th dose dependent rect. 10 3
225 472.92 wind 5.0 90 > th dose independent rect. 14 2
247 473.20 precipitation 0.1 270 < th dose independent rect. 15 22
248 473.20 precipitation 0.1 270 < th dose dependent rect. 15 22
259 473.38 humidity 50.0 270 > th dose independent rect. 11 6
264 473.44 wind 5.0 90 > th dose independent rect. 13 5
287 473.74 temperature 15.0 90 > th dose independent rect. 17 9
310 473.83 radiation 20.0 270 < th dose dependent sin 10 NA
324 474.00 radiation 1.0 90 > th dose independent rect. 4 9
335 474.01 temperature 25.0 90 > th dose independent rect. 14 2
342 474.07 wind 1.0 10 > th dose dependent rect. 14 2
347 474.11 temperature 20.0 10 < th dose independent rect. 4 1
367 474.31 temperature 20.0 10 > th dose independent rect. 14 3
389 474.40 wind 9.0 10 < th dose independent rect. 17 21
391 474.42 temperature 30.0 10 < th dose dependent rect. 2 16
401 474.48 atmosphere 1005.0 10 > th dose dependent rect. 14 4
403 474.50 wind 1.0 10 > th dose independent rect. 14 3
411 474.58 temperature 10.0 10 > th dose independent rect. 14 3
413 474.58 atmosphere 1010.0 10 < th dose independent rect. 14 3
415 474.58 precipitation 0.1 10 < th dose independent rect. 14 3
417 474.58 precipitation 0.1 10 < th dose dependent rect. 14 3
422 474.63 temperature 10.0 10 > th dose dependent rect. 9 13
428 474.72 radiation 40.0 10 < th dose independent rect. 14 3
442 474.76 radiation 10.0 270 > th dose independent sin 11 NA
470 474.77 temperature 10.0 10 > th dose dependent rect. 14 3
482 474.85 radiation 10.0 270 > th dose independent rect. 12 3
488 474.89 wind 9.0 10 < th dose independent rect. 14 3
516 475.03 temperature 15.0 10 > th dose independent rect. 17 9
517 475.03 precipitation 0.1 10 < th dose independent rect. 17 21
519 475.03 precipitation 0.1 10 < th dose dependent rect. 17 21
520 475.04 precipitation 0.1 270 > th dose independent rect. 4 14
525 475.09 precipitation 0.1 1440 < th dose independent rect. 10 3
527 475.09 precipitation 0.1 1440 < th dose dependent rect. 10 3
539 475.16 temperature 30.0 270 < th dose independent rect. 12 17
547 475.22 humidity 80.0 14400 > th dose dependent rect. 4 3
565 475.29 temperature 10.0 90 > th dose dependent rect. 14 2
574 475.34 humidity 60.0 90 > th dose independent rect. 14 17
576 475.35 radiation 10.0 270 > th dose independent rect. 9 1
597 475.43 radiation 1.0 270 > th dose independent rect. 11 5
612 475.52 humidity 60.0 90 > th dose independent rect. 14 15
616 475.54 humidity 80.0 270 < th dose independent rect. 17 17
617 475.54 precipitation 0.1 270 > th dose independent rect. 22 20
620 475.54 temperature 10.0 270 > th dose dependent rect. 6 16
633 475.63 atmosphere 1015.0 10 < th dose dependent rect. 14 3
648 475.77 humidity 80.0 14400 > th dose dependent rect. 3 5
668 475.79 precipitation 0.1 270 > th dose dependent rect. 20 22
672 475.83 atmosphere 1015.0 90 < th dose dependent rect. 14 1
690 475.90 humidity 50.0 270 > th dose independent rect. 11 18
697 475.94 atmosphere 1015.0 1440 < th dose independent rect. 15 2
710 475.97 radiation 40.0 14400 < th dose dependent rect. 4 1
712 475.98 radiation 1.0 90 < th dose independent rect. 7 7
716 476.01 radiation 10.0 270 > th dose independent rect. 6 4
770 476.10 temperature 30.0 90 > th dose independent rect. 16 21
771 476.11 precipitation 0.1 1440 > th dose independent rect. 12 1
774 476.11 precipitation 0.1 1440 > th dose dependent rect. 12 1
780 476.13 radiation 1.0 90 < th dose dependent rect. 7 7
797 476.19 radiation 10.0 4320 < th dose dependent rect. 4 1
800 476.21 precipitation 0.1 90 > th dose independent rect. 7 4
806 476.21 precipitation 0.1 90 > th dose dependent rect. 7 4
837 476.28 wind 1.0 1440 < th dose independent rect. 17 1
871 476.39 radiation 10.0 270 < th dose independent sin 11 NA
873 476.40 wind 1.0 1440 < th dose dependent rect. 17 1
895 476.49 precipitation 0.1 90 < th dose independent rect. 16 10
897 476.49 precipitation 0.1 90 < th dose dependent rect. 16 10
899 476.50 humidity 90.0 14400 < th dose independent rect. 4 3
901 476.50 wind 1.0 90 > th dose independent rect. 13 15
905 476.51 atmosphere 995.0 10 > th dose independent rect. 14 3
906 476.51 atmosphere 1005.0 10 > th dose independent rect. 14 4
912 476.52 humidity 50.0 10 > th dose independent rect. 18 20
919 476.55 atmosphere 995.0 270 > th dose independent rect. 11 5
938 476.60 radiation 20.0 90 < th dose independent sin 14 NA
940 476.61 atmosphere 1010.0 270 < th dose independent rect. 11 5
947 476.63 temperature 10.0 90 > th dose dependent rect. 4 9
952 476.65 radiation 1.0 10 < th dose independent rect. 7 5
957 476.65 radiation 1.0 10 < th dose dependent rect. 7 5
959 476.65 temperature 10.0 30 > th dose dependent rect. 9 17
964 476.67 wind 9.0 270 < th dose independent rect. 11 5
976 476.70 temperature 10.0 270 > th dose independent rect. 11 5
987 476.73 precipitation 0.1 270 < th dose independent rect. 11 5
989 476.73 precipitation 0.1 270 < th dose dependent rect. 11 5
992 476.75 humidity 90.0 14400 < th dose independent rect. 3 5