Os01g0642600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF617, plant family protein.
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Os01g0642600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF617, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 138.56 | 0.553 | 7.85 | 1.71 | 1.87 | -1.53 | -0.21 | 0.983 | -0.0424 | 9.34 | 20.09 | 274 | 4.99 | 6.03 |
| 138.98 | 0.549 | 7.86 | 1.66 | 1.9 | -1.49 | 0.0549 | -- | -0.0484 | 9.35 | 19.61 | 279 | 4.93 | 6.1 |
| 138.65 | 0.548 | 7.85 | 1.68 | 1.88 | -1.53 | -- | 0.698 | -0.0473 | 9.33 | 19.98 | 273 | 4.95 | 6.08 |
| 138.93 | 0.549 | 7.86 | 1.64 | 1.92 | -1.51 | -- | -- | -0.0586 | 9.37 | 19.38 | 283 | 4.88 | 6.12 |
| 177.31 | 0.62 | 7.95 | 1.55 | -- | -1.19 | -- | 0.115 | -0.181 | -- | -23.29 | 394 | 10.8 | 12.8 |
| 172.1 | 0.615 | 7.9 | 1.5 | 1.25 | -- | -0.047 | -- | -0.179 | 8.41 | -- | -- | -- | -- |
| 172.11 | 0.614 | 7.9 | 1.49 | 1.25 | -- | -- | -- | -0.179 | 8.41 | -- | -- | -- | -- |
| 173.11 | 0.613 | 7.93 | 1.58 | -- | -1.16 | -- | -- | -0.142 | -- | -108.6 | 399 | 9.77 | 14.1 |
| 208.61 | 0.673 | 7.89 | -- | 1.86 | -1.27 | -- | -- | -0.238 | 9.16 | 19.16 | 283 | 4.77 | 6.27 |
| 259.37 | 0.753 | 7.94 | 1.5 | -- | -- | -- | -- | -0.167 | -- | -- | -- | -- | -- |
| 230.94 | 0.711 | 7.94 | -- | 1.26 | -- | -- | -- | -0.346 | 8.32 | -- | -- | -- | -- |
| 232.01 | 0.709 | 7.96 | -- | -- | -1.16 | -- | -- | -0.345 | -- | -139.7 | 349 | 10.1 | 13.9 |
| 318.78 | 0.833 | 7.97 | -- | -- | -- | -- | -- | -0.333 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 138.61 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 6 |
| 4 | 140.67 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 5 |
| 9 | 142.26 | temperature | 25 | 270 | > th | dose independent | rect. | 2 | 9 |
| 34 | 145.20 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 10 |
| 101 | 147.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 165 | 147.99 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 13 |
| 188 | 148.16 | temperature | 25 | 90 | > th | dose dependent | sin | 6 | NA |
| 213 | 148.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 8 |
| 257 | 149.46 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 270 | 149.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 13 |
| 288 | 149.97 | temperature | 30 | 90 | < th | dose dependent | sin | 4 | NA |
| 303 | 150.19 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 5 |
| 321 | 150.46 | temperature | 25 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 323 | 150.57 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 3 |
| 325 | 150.59 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 337 | 150.76 | temperature | 25 | 270 | > th | dose independent | sin | 5 | NA |
| 357 | 150.91 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 359 | 150.94 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 413 | 151.56 | temperature | 25 | 90 | > th | dose independent | rect. | 10 | 1 |
| 428 | 151.68 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 454 | 151.91 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 5 |
| 468 | 151.97 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 1 |
| 484 | 152.07 | temperature | 15 | 90 | > th | dose dependent | sin | 4 | NA |
| 491 | 152.11 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 21 |
| 629 | 153.08 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 18 |
| 647 | 153.19 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 692 | 153.36 | wind | 9 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 733 | 153.49 | humidity | 60 | 10 | > th | dose dependent | rect. | 17 | 11 |
| 771 | 153.64 | humidity | 70 | 10 | > th | dose dependent | rect. | 13 | 15 |
| 782 | 153.70 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 859 | 153.99 | humidity | 80 | 1440 | < th | dose dependent | rect. | 3 | 5 |
| 883 | 154.06 | temperature | 25 | 10 | < th | dose independent | rect. | 16 | 12 |