BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0642600 Os01g0642600|Os01g0642600
(303 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G25640.1 | chr3:9333775-9334578 FORWARD LENGTH=268 183 9e-47
AT5G23100.1 | chr5:7753557-7754390 FORWARD LENGTH=278 173 8e-44
AT2G41660.1 | chr2:17367945-17368838 FORWARD LENGTH=298 155 3e-38
AT5G06990.1 | chr5:2169699-2170484 FORWARD LENGTH=262 129 2e-30
AT4G39610.1 | chr4:18393808-18394602 REVERSE LENGTH=265 126 1e-29
AT2G21990.1 | chr2:9359573-9360331 REVERSE LENGTH=253 121 4e-28
AT5G42680.1 | chr5:17114640-17115356 FORWARD LENGTH=239 112 2e-25
AT2G37880.1 | chr2:15860705-15861448 FORWARD LENGTH=248 109 2e-24
AT1G76610.1 | chr1:28751049-28751729 FORWARD LENGTH=227 102 3e-22
AT1G21050.1 | chr1:7366859-7367596 FORWARD LENGTH=246 95 4e-20
AT5G65340.1 | chr5:26113684-26114445 REVERSE LENGTH=254 87 9e-18
AT2G22460.1 | chr2:9533354-9534091 REVERSE LENGTH=246 65 3e-11
>AT3G25640.1 | chr3:9333775-9334578 FORWARD LENGTH=268
Length = 267
Score = 183 bits (465), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 120/205 (58%), Gaps = 41/205 (20%)
Query: 110 GLGARLTGTLYGHRRGHVHLAFQVDXXXXXXXXXXXXXXXXXXVREMASGLVRIALECER 169
GLG R+ GTL+G+RRGHV+ A Q D VREMASGLVRIALE
Sbjct: 93 GLGFRVVGTLFGNRRGHVYFAVQDDPTRLPAVLIQLPTPTSVLVREMASGLVRIALET-- 150
Query: 170 AKGGGACAFPTXXXXXXXXXXXXXXXXXGGRKLVEETVWRAYCNGRSCGYAVRRECGAAD 229
A+ T +KL+EE+ WR YCNG+ CGYA R+ECG A+
Sbjct: 151 ------AAYKTDSK----------------KKLLEESTWRTYCNGKKCGYAARKECGEAE 188
Query: 230 WRVLRALEPVSMGAGVIPA-----------ACGGGEGDVMYMRARFERVVGSRDSEAFYM 278
W+VL+A+ P++MGAGV+PA A G +G++MYMRARFERVVGSRDSEAFYM
Sbjct: 189 WKVLKAVGPITMGAGVLPATTTTVDEEGNGAVGSEKGELMYMRARFERVVGSRDSEAFYM 248
Query: 279 MNPDCXXXXXXXXXXPELSVYLLRV 303
MNPD PELSVY LRV
Sbjct: 249 MNPDV------SSGGPELSVYFLRV 267
>AT5G23100.1 | chr5:7753557-7754390 FORWARD LENGTH=278
Length = 277
Score = 173 bits (439), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 99/204 (48%), Positives = 121/204 (59%), Gaps = 13/204 (6%)
Query: 106 HRQVGLGARLTGTLYGHRRGHVHLAFQVDXXXXXXXXXXXXXXXXXXVREMASGLVRIAL 165
++ GLG+R+ GTL+G RRGHVH + Q D V+EMASGLVRIAL
Sbjct: 81 NQNSGLGSRVVGTLFGSRRGHVHFSIQKDPNSPPAFLIELATPISGLVKEMASGLVRIAL 140
Query: 166 ECERAKGGGACAFPTXXXXXXXXXXXXXXXXXG-GRKLVEETVWRAYCNGRSCGYAVRRE 224
EC++ K R+LVEE +WR YCNG+ CG+A RRE
Sbjct: 141 ECDKGKEEEEGEEKNGTLRHGGGDKTKTTTTAAVSRRLVEEPMWRTYCNGKKCGFATRRE 200
Query: 225 CGAADWRVLRALEPVSMGAGVIPAA-----CGGGEGDVMYMRARFERVVGSRDSEAFYMM 279
CG + +VL+ALE VSMGAGV+P GGG GD+MYMRA+FER+VGSRDSEAFYMM
Sbjct: 201 CGEKEKKVLKALEMVSMGAGVLPETEEIGGGGGGGGDIMYMRAKFERIVGSRDSEAFYMM 260
Query: 280 NPDCXXXXXXXXXXPELSVYLLRV 303
NPD PELS+YLLR+
Sbjct: 261 NPDS-------NGAPELSIYLLRI 277
>AT2G41660.1 | chr2:17367945-17368838 FORWARD LENGTH=298
Length = 297
Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 90/205 (43%), Positives = 109/205 (53%), Gaps = 44/205 (21%)
Query: 111 LGARLTGTLYGHRRGHVHLAFQVDXXXXXXXXXXXXXXXXXXVREMASGLVRIALECERA 170
LG R+TGTLYGH+RGHV + Q + V+EM+SGLVRIALECE+
Sbjct: 125 LGRRVTGTLYGHKRGHVTFSVQYNQRSDPVLLLDLAMSTATLVKEMSSGLVRIALECEKR 184
Query: 171 KGGGACAFPTXXXXXXXXXXXXXXXXXGGRKLVEETVWRAYCNGRSCGYAVRR--ECGAA 228
G KL +E W YCNGR CGYAV R C
Sbjct: 185 HRSGT-------------------------KLFQEPKWTMYCNGRKCGYAVSRGGACTDT 219
Query: 229 DWRVLRALEPVSMGAGVIP--------AACGGGE--GDVMYMRARFERVVGSRDSEAFYM 278
DWRVL + V++GAGVIP + G G G+++YMR +FERVVGSRDSEAFYM
Sbjct: 220 DWRVLNTVSRVTVGAGVIPTPKTIDDVSGVGSGTELGELLYMRGKFERVVGSRDSEAFYM 279
Query: 279 MNPDCXXXXXXXXXXPELSVYLLRV 303
MNPD PELS++LLR+
Sbjct: 280 MNPD-------KNGGPELSIFLLRI 297
>AT5G06990.1 | chr5:2169699-2170484 FORWARD LENGTH=262
Length = 261
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 102/204 (50%), Gaps = 44/204 (21%)
Query: 112 GARLTGTLYGHRRGHVHLAFQVDXXXXXXXXXXXXXXXXXXVREMASGLVRIALECERAK 171
G R+TGTL+G+R+ V+LA Q + ++++ GLVRIALECE+
Sbjct: 90 GTRVTGTLFGYRKTRVNLAVQENPRSLPILLLELAIPTGKLLQDLGVGLVRIALECEKKP 149
Query: 172 GGGACAFPTXXXXXXXXXXXXXXXXXGGRKLVEETVWRAYCNGRSCGYAVRRECGAADWR 231
K+++E +W YCNG+ GY V+R+ D
Sbjct: 150 SEKT-------------------------KIIDEPIWALYCNGKKSGYGVKRQPTEEDLV 184
Query: 232 VLRALEPVSMGAGVIPAACGG------------GEGDVMYMRARFERVVGSRDSEAFYMM 279
V++ L VSMGAGV+P + G EGD+ YMRA FERV+GSRDSE +YMM
Sbjct: 185 VMQMLHAVSMGAGVLPVSSGAITEQSGGGGGGQQEGDLTYMRAHFERVIGSRDSETYYMM 244
Query: 280 NPDCXXXXXXXXXXPELSVYLLRV 303
NPD PELS++ +RV
Sbjct: 245 NPD-------GNSGPELSIFFVRV 261
>AT4G39610.1 | chr4:18393808-18394602 REVERSE LENGTH=265
Length = 264
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 99/193 (51%), Gaps = 25/193 (12%)
Query: 113 ARLTGTLYGHRRGHVHLAFQVDXXXXXXXXXXXXXXXXXXVREMASGLVRIALECERAKG 172
+R+TGTL+G+R+G V L+ Q + +E+++G+VRIALE E+
Sbjct: 95 SRITGTLFGYRKGRVSLSIQENPKCLPSLVVELAMQTTTLQKELSTGMVRIALETEKQPR 154
Query: 173 GGACAFPTXXXXXXXXXXXXXXXXXGGRKLVEETVWRAYCNGRSCGYAVRRECGAADWRV 232
T ++EE +W YC G GY V+RE D V
Sbjct: 155 ADNNNSKTEKKT----------------DILEEPLWTMYCKGEKTGYGVKREATEEDLNV 198
Query: 233 LRALEPVSMGAGVIP--AACGGGEGDVMYMRARFERVVGSRDSEAFYMMNPDCXXXXXXX 290
+ L PVSMGAGV+P + G +G++ YMRA FERV+GS+DSE FYM++P+
Sbjct: 199 MELLRPVSMGAGVLPGNSESEGPDGEMAYMRAYFERVIGSKDSETFYMLSPE-------G 251
Query: 291 XXXPELSVYLLRV 303
PELS + +RV
Sbjct: 252 NNGPELSFFFVRV 264
>AT2G21990.1 | chr2:9359573-9360331 REVERSE LENGTH=253
Length = 252
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 101/201 (50%), Gaps = 33/201 (16%)
Query: 105 RHRQVGLGARLTGTLYGHRRGHVHLAFQVDXXXXXXXXXXXXXXXXXXVREMASGLVRIA 164
+HR G+R+TGTL+G+R+G V L+ Q +E++ G+VRIA
Sbjct: 83 QHRSGSSGSRVTGTLFGYRKGRVSLSIQESPRCLPSLVVELAMQTMVLQKELSGGMVRIA 142
Query: 165 LECERAKGGGACAFPTXXXXXXXXXXXXXXXXXGGRKLVEETVWRAYCNGRSCGYAVRRE 224
LE E+ K+++E +W + NG+ GY V+R+
Sbjct: 143 LETEKRGDKEKI------------------------KIMDEPLWTMFSNGKKTGYGVKRD 178
Query: 225 CGAADWRVLRALEPVSMGAGVIPAAC--GGGEGDVMYMRARFERVVGSRDSEAFYMMNPD 282
D V+ L PVSMGAGV+P G + ++ YMRA FERVVGS+DSE FYM++P+
Sbjct: 179 ATEEDLNVMELLRPVSMGAGVLPGNTEFEGPDSEMAYMRAYFERVVGSKDSETFYMLSPE 238
Query: 283 CXXXXXXXXXXPELSVYLLRV 303
PELS++ +RV
Sbjct: 239 -------GNNGPELSIFFVRV 252
>AT5G42680.1 | chr5:17114640-17115356 FORWARD LENGTH=239
Length = 238
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 94/191 (49%), Gaps = 36/191 (18%)
Query: 116 TGTLYGHRRGHVHLAFQVDXXXXXXXXXXXXXXXXXXVREMASGLVRIALECERAKGGGA 175
TGT++G R+G V LA Q D +EMAS VRIALE E
Sbjct: 78 TGTIFGFRKGRVFLAIQEDPHCLPIFIIELPMLTSALQKEMASETVRIALESE------- 130
Query: 176 CAFPTXXXXXXXXXXXXXXXXXGGRKLVEETVWRAYCNGRSCGYAVRRE-CGAADWRVLR 234
+K++EE VW YCNGR GY++RR+ + V+
Sbjct: 131 -------------------TKTSRKKVLEEYVWGIYCNGRKIGYSIRRKNMSEEEMYVID 171
Query: 235 ALEPVSMGAGVIPAACG---GGEGDVMYMRARFERVVGSRDSEAFYMMNPDCXXXXXXXX 291
AL VSMGAGV+P EG++ YMRARF+RV+GS+DSEA YM+NP+
Sbjct: 172 ALRGVSMGAGVLPCKNQYDQETEGEMTYMRARFDRVIGSKDSEALYMINPE------GSG 225
Query: 292 XXPELSVYLLR 302
ELS+Y LR
Sbjct: 226 QGTELSIYFLR 236
>AT2G37880.1 | chr2:15860705-15861448 FORWARD LENGTH=248
Length = 247
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 91/195 (46%), Gaps = 38/195 (19%)
Query: 115 LTGTLYGHRRGHVHLAFQVD-XXXXXXXXXXXXXXXXXXVREMASGLVRIALECERAKGG 173
+ GT++G R+GHV Q D V EM SGLVR+ALEC
Sbjct: 81 VIGTIFGRRKGHVWFCVQHDRLSVKPILLLELSIATSQLVHEMGSGLVRVALECPTRPEL 140
Query: 174 GACAFPTXXXXXXXXXXXXXXXXXGGRKLVEETVWRAYCNGRSCGYAVRRECGAADWRVL 233
+C L VW +CNGR G+AVRR +L
Sbjct: 141 KSCL------------------------LRSVPVWTMFCNGRKLGFAVRRSANEETRMML 176
Query: 234 RALEPVSMGAGVIPAACGGGEGD------VMYMRARFERVVGSRDSEAFYMMNPDCXXXX 287
+ LE +++GAGV+P+ G G D VMYMRA +E VVGS DSE+F+++NPD
Sbjct: 177 KRLESMTVGAGVLPSGSGLGGSDESDTDEVMYMRANYEHVVGSSDSESFHLINPDANSAQ 236
Query: 288 XXXXXXPELSVYLLR 302
ELS++LLR
Sbjct: 237 -------ELSIFLLR 244
>AT1G76610.1 | chr1:28751049-28751729 FORWARD LENGTH=227
Length = 226
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 78/171 (45%), Gaps = 35/171 (20%)
Query: 112 GARLTGTLYGHRRGHVHLAFQVDX--XXXXXXXXXXXXXXXXXVREMASGLVRIALECER 169
G +TGT YGHRRGHV Q D REM G +RIAL +
Sbjct: 73 GVVVTGTFYGHRRGHVSFCLQDDTRPSSPPLLLLELAVPTAALAREMEEGFLRIALRSKS 132
Query: 170 AKGGGACAFPTXXXXXXXXXXXXXXXXXGGRKLVEETVWRAYCNGRSCGYAVRRECGAAD 229
+ P VW YCNGR G+AVRRE D
Sbjct: 133 NRRSSIFNVP---------------------------VWSMYCNGRKFGFAVRRETTEND 165
Query: 230 WRVLRALEPVSMGAGVIPAACGGGEGDVMYMRARFERVVGSRDSEAFYMMN 280
LR ++ VS+GAGVIP G+ +Y+RA+FERV GS DSE+F+M+N
Sbjct: 166 VGFLRLMQSVSVGAGVIP------NGETLYLRAKFERVTGSSDSESFHMVN 210
>AT1G21050.1 | chr1:7366859-7367596 FORWARD LENGTH=246
Length = 245
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 89/188 (47%), Gaps = 34/188 (18%)
Query: 117 GTLYGHRRGHVHLAFQ-VDXXXXXXXXXXXXXXXXXXVREM-ASGLVRIALECERAKGGG 174
GT +GHRRG V Q +EM G++RIALEC+R +
Sbjct: 89 GTFFGHRRGRVSFCLQDAAVGSSPLLLLELAVPTAALAKEMDEEGVLRIALECDRRRSSN 148
Query: 175 ACAFPTXXXXXXXXXXXXXXXXXGGRKLVEETVWRAYCNGRSCGYAVRRECGAADWRVLR 234
+ + + VW +CNGR G+AVRR+ D LR
Sbjct: 149 S----------------------RSSSIFDVPVWSMFCNGRKMGFAVRRKVTENDAVFLR 186
Query: 235 ALEPVSMGAGVIPAACGGGEGDVMYMRARFERVVGSRDSEAFYMMNPDCXXXXXXXXXXP 294
++ VS+GAGV+P+ E ++Y+RARFERV GS DSE+F+MMNP
Sbjct: 187 MMQSVSVGAGVVPSE---EEDQMLYLRARFERVTGSSDSESFHMMNP-------GGSYGQ 236
Query: 295 ELSVYLLR 302
ELS++LLR
Sbjct: 237 ELSIFLLR 244
>AT5G65340.1 | chr5:26113684-26114445 REVERSE LENGTH=254
Length = 253
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 77/172 (44%), Gaps = 24/172 (13%)
Query: 115 LTGTLYGHRRGHVHLAFQVDXXXXXX---XXXXXXXXXXXXVREMASGLVRIALECERAK 171
TGT++G RRG V+ Q REM G++RIALE
Sbjct: 83 FTGTIFGFRRGKVNFCIQATNSKTLNPIIVLLELTVPTEVLAREMQGGVLRIALESNNND 142
Query: 172 GGGACAFPTXXXXXXXXXXXXXXXXXGGRKLVEETVWRAYCNGRSCGYAVRRECGAADWR 231
G + L+ +W YCNGR G+A++RE ++
Sbjct: 143 GYDS-------------------HEDSSSSLLTTPLWNMYCNGRKVGFAIKREPSKSELA 183
Query: 232 VLRALEPVSMGAGVIPAACGGGEGD--VMYMRARFERVVGSRDSEAFYMMNP 281
L+ L PV+ GAGV+ E +MY+RA F+RV GS DSE+F++++P
Sbjct: 184 ALKVLTPVAEGAGVVNGEEINREKSDHMMYLRASFKRVFGSFDSESFHLVDP 235
>AT2G22460.1 | chr2:9533354-9534091 REVERSE LENGTH=246
Length = 245
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 27/169 (15%)
Query: 115 LTGTLYGHRRGHVHLAFQVDXXXXXXXXXXXXXXXXXXV-REMASGLVRIALECERAKGG 173
+TGT++G+R+G ++ Q + REM G +RI LE K
Sbjct: 85 VTGTIFGYRKGKINFCIQTPRKSTNLDLLLELAVPTTVLAREMREGALRIVLERNNEKQD 144
Query: 174 GACAFPTXXXXXXXXXXXXXXXXXGGRKLVEETVWRAYCNGRSCGYAVRRECGAADWRVL 233
+ + W YCNG+ GYA +R D L
Sbjct: 145 DDS-------------------------FLSKPFWNMYCNGKRVGYARKRSPSQDDMTAL 179
Query: 234 RAL-EPVSMGAGVIPAACGGGEGDVMYMRARFERVVGSRDSEAFYMMNP 281
AL + V V G + ++MY+RA F RV GS++SE+F++++P
Sbjct: 180 TALSKVVVGAGVVTGKELGRFDDELMYLRASFRRVNGSKESESFHLIDP 228
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.136 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,567,492
Number of extensions: 141040
Number of successful extensions: 327
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 13
Length of query: 303
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 205
Effective length of database: 8,419,801
Effective search space: 1726059205
Effective search space used: 1726059205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)