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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0638800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF617, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.04 (0.059) R2 : 0.74
β1 : 6.87 (0.262) R2dD : 0.841 R2D : 0.328
β2 : -- (--) R2dC : -- R2C : --
β3 : -4.47 (0.336) R2dE : 0.31 R2E : 0.189
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -12.3 (1.12) R2dD*E : 0.346 R2D*E : -0.967
γ1 : 1.62 (0.118) R2dN8 : 0.179 R2N8 : 0.0106
σ : 0.93
deviance : 398.41
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.42
memory length : 13431
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
408.82 0.95 6.09 7.21 0.615 -4.16 2.32 -12.4 1.66 15.3 0.5966 5735 -- --
462.16 1 6.41 5.28 1.05 -3.33 -1.57 -- 1.24 2.11 2.18 3341 -- --
409.76 0.943 6.06 7.18 0.0729 -4.51 -- -12.7 1.7 15.5 0.48 10338 -- --
475.16 1.02 6.39 5.37 0.966 -3.07 -- -- 1.27 1.96 2.172 3340 -- --
398.41 0.93 6.04 6.87 -- -4.47 -- -12.3 1.62 -- 0.42 13431 -- --
535.2 1.08 6.32 5.82 0.655 -- 1.13 -- 1.66 17 -- -- -- --
536.06 1.08 6.32 5.82 0.701 -- -- -- 1.66 18.1 -- -- -- --
489.93 1.03 6.35 5.53 -- -1.98 -- -- 1.43 -- 2.013 3657 -- --
505.07 1.05 6.69 -- 0.498 -5.22 -- -- -0.166 23.2 0.009938 46533 -- --
561.5 1.11 6.31 5.8 -- -- -- -- 1.64 -- -- -- -- --
1429.14 1.77 6.46 -- 0.62 -- -- -- 1.01 18.5 -- -- -- --
490.79 1.03 6.72 -- -- -4.89 -- -- -0.217 -- 0.0001075 46791 -- --
1449.16 1.78 6.45 -- -- -- -- -- 1 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 349.50 radiation 1 14400 < th dose dependent rect. 20 9
2 349.92 radiation 1 14400 < th dose dependent rect. 22 7
4 350.49 radiation 1 14400 < th dose dependent rect. 24 5
8 359.38 radiation 1 14400 < th dose dependent rect. 3 2
21 383.22 radiation 10 43200 > th dose dependent rect. 17 1
33 383.40 radiation 20 43200 < th dose independent rect. 17 12
37 383.87 radiation 40 43200 < th dose dependent rect. 19 10
44 384.14 radiation 10 43200 < th dose independent rect. 17 5
46 384.15 radiation 10 43200 < th dose independent rect. 17 3
51 384.26 radiation 40 43200 < th dose independent rect. 15 14
67 384.67 radiation 40 43200 < th dose independent rect. 15 1
96 386.51 radiation 40 43200 < th dose dependent rect. 22 7
97 386.61 radiation 30 43200 > th dose dependent rect. 15 17
100 387.87 humidity 60 43200 < th dose independent rect. 10 1
111 387.99 radiation 30 43200 > th dose dependent rect. 15 1
130 388.64 humidity 90 43200 > th dose dependent rect. 2 1
146 389.35 wind 1 43200 < th dose dependent rect. 7 1
152 389.74 radiation 10 43200 < th dose independent rect. 19 11
163 389.83 humidity 90 43200 > th dose dependent rect. 2 3
164 389.84 radiation 10 43200 < th dose independent rect. 1 5
170 389.89 radiation 10 43200 < th dose independent rect. 21 9
177 390.17 humidity 90 43200 < th dose independent rect. 24 1
191 390.49 humidity 90 43200 > th dose independent rect. 23 1
196 390.75 humidity 90 43200 > th dose dependent rect. 23 2
224 391.01 temperature 20 14400 < th dose dependent rect. 22 3
225 391.01 humidity 90 43200 > th dose dependent rect. 23 4
227 391.10 humidity 90 43200 > th dose dependent rect. 23 6
232 391.25 radiation 40 43200 < th dose dependent rect. 17 13
242 391.57 temperature 20 14400 < th dose dependent rect. 19 7
249 391.85 temperature 20 14400 < th dose dependent rect. 23 1
278 392.27 humidity 60 43200 < th dose dependent rect. 10 1
343 393.89 temperature 20 14400 < th dose independent rect. 4 1
354 394.09 humidity 60 43200 < th dose independent rect. 18 18
356 394.11 temperature 20 14400 > th dose independent rect. 4 1
375 394.59 radiation 40 43200 < th dose independent rect. 23 9
389 394.76 temperature 20 14400 < th dose dependent sin 15 NA
408 394.79 wind 1 43200 < th dose dependent rect. 20 1
413 394.87 radiation 40 43200 < th dose independent rect. 7 1
431 394.95 humidity 90 43200 > th dose independent rect. 22 6
447 395.18 humidity 60 43200 < th dose independent rect. 6 6
450 395.20 humidity 60 43200 < th dose independent rect. 2 10
465 395.32 humidity 60 43200 < th dose independent rect. 23 13
530 395.89 radiation 1 43200 < th dose dependent rect. 7 4
531 395.91 radiation 1 43200 > th dose independent rect. 4 1
541 395.91 radiation 1 43200 > th dose dependent rect. 4 1
578 396.42 temperature 20 14400 > th dose independent rect. 24 7
605 396.71 temperature 20 14400 < th dose dependent rect. 19 19
606 396.72 temperature 20 14400 < th dose independent rect. 1 5
608 396.72 temperature 20 14400 < th dose dependent rect. 19 17
613 396.73 temperature 20 14400 < th dose independent rect. 24 7
649 397.01 temperature 20 14400 > th dose independent rect. 24 3
674 397.12 humidity 90 43200 > th dose dependent rect. 14 15
687 397.20 humidity 60 43200 > th dose independent rect. 10 1
688 397.21 temperature 20 14400 < th dose dependent rect. 10 22
787 397.52 temperature 20 14400 < th dose dependent no NA NA
800 397.62 wind 1 43200 < th dose dependent rect. 22 6
803 397.64 radiation 30 43200 > th dose dependent rect. 7 1
837 397.78 radiation 1 43200 > th dose independent rect. 9 2
841 397.83 radiation 1 43200 < th dose independent rect. 9 2
878 398.14 temperature 20 14400 < th dose dependent rect. 23 23
932 398.60 humidity 60 43200 > th dose independent rect. 18 17
963 398.80 radiation 1 43200 < th dose dependent rect. 10 1
996 399.02 temperature 25 14400 > th dose independent rect. 11 1