BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0638800 Os04g0638800|AK070319
(301 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0638800 Protein of unknown function DUF617, plant fami... 437 e-123
Os08g0171800 Protein of unknown function DUF617, plant fami... 182 2e-46
Os01g0806400 Protein of unknown function DUF617, plant fami... 139 2e-33
Os01g0268700 121 7e-28
Os09g0463600 Protein of unknown function DUF617, plant fami... 118 6e-27
Os08g0476600 Protein of unknown function DUF617, plant fami... 115 3e-26
Os05g0577100 Protein of unknown function DUF617, plant fami... 114 9e-26
Os01g0642600 Protein of unknown function DUF617, plant fami... 107 1e-23
Os05g0280150 95 5e-20
Os02g0709600 Protein of unknown function DUF617, plant fami... 90 2e-18
Os03g0733266 74 2e-13
>Os04g0638800 Protein of unknown function DUF617, plant family protein
Length = 301
Score = 437 bits (1124), Expect = e-123, Method: Compositional matrix adjust.
Identities = 226/301 (75%), Positives = 226/301 (75%)
Query: 1 MADHAVVVDDGGSRRMRPXXXXXXXXXXXXXXXXKKQFLRAAGRALEAAXXXXXXXXXXX 60
MADHAVVVDDGGSRRMRP KKQFLRAAGRALEAA
Sbjct: 1 MADHAVVVDDGGSRRMRPASLSSSSDAEDDDAGSKKQFLRAAGRALEAAPPVRRRPGRPS 60
Query: 61 XXXXMFHTMCRSLPVLTPGCGRLQPAGAACRIXXXXXXXXXXXXXXKLVXXXXXXXXXXX 120
MFHTMCRSLPVLTPGCGRLQPAGAACRI KLV
Sbjct: 61 RPVRMFHTMCRSLPVLTPGCGRLQPAGAACRIAAPSRLSPSASLMSKLVASASTGAAGAS 120
Query: 121 XXXXXXXLFGYRDARIALSLQDNPRCQPTLVVELALPTHALLRDLGTTAGARIVLESEKR 180
LFGYRDARIALSLQDNPRCQPTLVVELALPTHALLRDLGTTAGARIVLESEKR
Sbjct: 121 RRRMTGTLFGYRDARIALSLQDNPRCQPTLVVELALPTHALLRDLGTTAGARIVLESEKR 180
Query: 181 XXXXXXXXXXXXSSRREREQQDGWVLEESMWTMSCNGKKVGYAVRRDPTDDDIAVLETLW 240
SSRREREQQDGWVLEESMWTMSCNGKKVGYAVRRDPTDDDIAVLETLW
Sbjct: 181 AADGGDGAGAGASSRREREQQDGWVLEESMWTMSCNGKKVGYAVRRDPTDDDIAVLETLW 240
Query: 241 AVSMGGGVLPGISDMDGKDGEMAYMRGSFEHIIGSRNSESLYMISPHGGDCPELAVFFVR 300
AVSMGGGVLPGISDMDGKDGEMAYMRGSFEHIIGSRNSESLYMISPHGGDCPELAVFFVR
Sbjct: 241 AVSMGGGVLPGISDMDGKDGEMAYMRGSFEHIIGSRNSESLYMISPHGGDCPELAVFFVR 300
Query: 301 L 301
L
Sbjct: 301 L 301
>Os08g0171800 Protein of unknown function DUF617, plant family protein
Length = 315
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/187 (51%), Positives = 123/187 (65%), Gaps = 21/187 (11%)
Query: 128 LFGYRDARIALSLQDNPRCQPTLVVELALPTHALLRDLGTTAGARIVLESEKRXXXXXXX 187
LFG+R R+AL+LQ+ PRC PTLV+ELA+ T+ALLR+L AGARIVLE+E+R
Sbjct: 137 LFGHRKGRVALALQETPRCLPTLVIELAIQTNALLRELANPAGARIVLETERRAPSTDAA 196
Query: 188 XXXXXSSRREREQQDGWVLEESMWTMSCNGKKVGYAVRRDPTDDDIAVLETLWAVSMGGG 247
+ ++ +L+ + WTM CNG+K G AVRR+ TDDD+AVLETL VSMG G
Sbjct: 197 AG--------KHRRAPPLLDVAAWTMFCNGRKTGLAVRREATDDDLAVLETLRPVSMGAG 248
Query: 248 VLPGISDMD------------GKDGEMAYMRGSFEHIIGSRNSESLYMISPHGGDC-PEL 294
VLP + D E+AYMRG F+H +GSR+SESLYMI+P GG PEL
Sbjct: 249 VLPASNRSSSSSSQSPEKGAAAADDEVAYMRGCFDHFVGSRDSESLYMIAPQGGGTGPEL 308
Query: 295 AVFFVRL 301
A+FFVRL
Sbjct: 309 AIFFVRL 315
>Os01g0806400 Protein of unknown function DUF617, plant family protein
Length = 272
Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 128/244 (52%), Gaps = 47/244 (19%)
Query: 69 MCRSLPVLTPGC---GRLQPAGAACRIXXXXXXXXXXXXXXKLVXXXXXXXXXXXXXXXX 125
+ RSLP+L P C G ++ G A R
Sbjct: 65 LFRSLPILAPACRFHGAIRAPGGASR---------------------AHDGHVSGASRTT 103
Query: 126 XXLFGYRDARIALSLQDNPRCQPTLVVELALPTHALLRDLGTTAGARIVLESEKRXXXXX 185
LFGYR AR+ L++Q+ P P L++ELA+ T ++++G R+ LE EK+
Sbjct: 104 GTLFGYRKARVTLAVQETPGSVPILLLELAMQTGRFMQEMGAEH-LRVALECEKKPPGAG 162
Query: 186 XXXXXXXSSRREREQQDGWVLEESMWTMSCNGKKVGYAVRRDPTDDDIAVLETLWAVSMG 245
R R +L+E +WT NG+K+GYA+RR+PT+ D+ V++ L VS+G
Sbjct: 163 AGIG------RTR------LLDEPLWTAYVNGRKIGYAMRREPTEGDLTVMQLLRTVSVG 210
Query: 246 GGVLPGISDMDGKD--------GEMAYMRGSFEHIIGSRNSESLYMISPHGGDCPELAVF 297
GVLP +D+ G D G++AYMR F+ ++GSR+SES YM++P G + PEL++F
Sbjct: 211 AGVLP--TDVMGGDAGAEVQDAGDLAYMRARFDRVVGSRDSESFYMLNPDGNNGPELSIF 268
Query: 298 FVRL 301
F+R+
Sbjct: 269 FIRI 272
>Os01g0268700
Length = 543
Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 100/177 (56%), Gaps = 9/177 (5%)
Query: 128 LFGYRDARIALSLQDNPRCQPTLVVELALPTHALLRDLGTTAGARIVLESEKRXXXXXXX 187
L+G+R ARI ++ D+P P L++++A+PT ++D+ R+ LE +K+
Sbjct: 371 LYGHRRARITIAFHDSPGSPPALLLDIAVPTAKFIQDVSAAGMVRVTLECDKQQHQPPPH 430
Query: 188 XXXXXSSRREREQQDGWVLEESMWTMSCNGKKVGYAVRRDPTDDDIAVLETLWAVSMGGG 247
R +L+E +W+ NG+ VGYA RR+ T+ D V+ L A+SMG G
Sbjct: 431 AHPPGDPLPPRR-----LLDEPVWSAEVNGESVGYAARREATEADERVMRLLHAMSMGAG 485
Query: 248 VLPGI---SDMDGKDGEMAYMRGSFEHIIGSRNSESLYMISPHG-GDCPELAVFFVR 300
VLP + + DGE+ YMR F+ ++GS+++E+ YM +P G PEL +FF+R
Sbjct: 486 VLPAVAADAPTSAADGEVTYMRAHFDRVVGSKDAETYYMHNPEGCATGPELTIFFIR 542
>Os09g0463600 Protein of unknown function DUF617, plant family protein
Length = 244
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 111/190 (58%), Gaps = 36/190 (18%)
Query: 128 LFGYRDARIALSLQDNPRCQPTLVVELALPTHALLRDLGTTAGARIVLESEKRXXXXXXX 187
LFG+R R++L++ ++ R P ++EL + T AL +++ ++ ++ LES+ R
Sbjct: 74 LFGHRRGRVSLAIHEDTRAPPVFLIELPMLTSALHKEI-SSGVVKLALESDTR------- 125
Query: 188 XXXXXSSRREREQQDGWVLEESMWTMSCNGKKVGYAVRR-DPTDDDIAVLETLWAVSMGG 246
S+RR ++EE +W + CNG+K GY++RR + +DD+ VL L VSMG
Sbjct: 126 -----SARRR-------LVEEYVWAVYCNGRKAGYSIRRKEASDDERHVLRLLRGVSMGA 173
Query: 247 GVLPGISDMDG-----KDGEMAYMRGSFEHIIGSRNSESLYMISPH----GGD------C 291
GVLP + +G DGE+ Y+R E ++GS++SE+ YMI+P+ GGD
Sbjct: 174 GVLPAAPEKEGGVPAGPDGELTYVRARVERVVGSKDSEAFYMINPNEGGVGGDSAGDGSA 233
Query: 292 PELAVFFVRL 301
PEL++F VR+
Sbjct: 234 PELSIFLVRM 243
>Os08g0476600 Protein of unknown function DUF617, plant family protein
Length = 1589
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 72/190 (37%), Positives = 105/190 (55%), Gaps = 37/190 (19%)
Query: 128 LFGYRDARIALSLQDNPRCQPTLVVELALPTHALLRDLGTTAGARIVLESEKRXXXXXXX 187
LFG+R R++L++ ++ R P ++EL + A+ R++ T ++ LES+ R
Sbjct: 83 LFGHRRGRLSLAIHEDTRAPPAFLIELPMLASAMHREMA-TGTVKLALESDTR------- 134
Query: 188 XXXXXSSRREREQQDGWVLEESMWTMSCNGKKVGYAVRR-DPTDDDIAVLETLWAVSMGG 246
S+RR +LEE +W + CNG+K GYA+RR D +DDD VL L VSMG
Sbjct: 135 -----SARRR-------LLEEYVWAVFCNGRKAGYAIRRKDASDDDRHVLRLLRGVSMGA 182
Query: 247 GVLP----GISDMDGKDGEMAYMRGSFEHIIGSRNSESLYMISPHGG-----------DC 291
GVLP G DGE+ YMR E ++GS++SE+ YMI+P G +C
Sbjct: 183 GVLPPPPADRRGGAGPDGELTYMRARVERVVGSKDSEAFYMINPDDGSDNGGAAGRDREC 242
Query: 292 -PELAVFFVR 300
PEL++F VR
Sbjct: 243 APELSIFLVR 252
>Os05g0577100 Protein of unknown function DUF617, plant family protein
Length = 297
Score = 114 bits (285), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 68/182 (37%), Positives = 99/182 (54%), Gaps = 17/182 (9%)
Query: 128 LFGYRDARIALSLQDNPRCQPTLVVELALPTHALLRDLGTTAGARIVLESEKRXXXXXXX 187
L+G+R + L+ Q +PR P L++ELA PT AL+R++ + RI LE E+
Sbjct: 125 LYGHRRGHVHLAFQLDPRACPALLLELAAPTAALVREMASGL-VRIALECERAKGGPAPA 183
Query: 188 XXXXXSSRREREQQDGWVLEESMWTMSCNGKKVGYAVRRDPTDDDIAVLETLWAVSMGGG 247
+ +LEE++W CNGK GYAVRR+ D VL L VSMG G
Sbjct: 184 LPTATGGGKR-------LLEETVWRAYCNGKSCGYAVRRECGAADWRVLRALEPVSMGAG 236
Query: 248 VLPGISDMDGKDGEMAYMRGSFEHIIGSRNSESLYMISP--------HGGDCPELAVFFV 299
V+P S G +G++ YMR FE ++GSR+SE+ YM++P PEL+V+ +
Sbjct: 237 VIPAAS-CGGGEGDVMYMRARFERVVGSRDSEAFYMMNPDSTSTSSNSNSGGPELSVYLL 295
Query: 300 RL 301
R+
Sbjct: 296 RV 297
>Os01g0642600 Protein of unknown function DUF617, plant family protein
Length = 303
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 102/191 (53%), Gaps = 23/191 (12%)
Query: 128 LFGYRDARIALSLQDNPRCQPTLVVELALPTHALLRDLGTTAGARIVLESEKRXXXXXXX 187
L+G+R + L+ Q +PR P L++ELA PT +L+R++ + RI LE E+
Sbjct: 119 LYGHRRGHVHLAFQVDPRACPALLLELAAPTASLVREMASGL-VRIALECERAKGGGACA 177
Query: 188 XXXXXSSRREREQQDGW-------VLEESMWTMSCNGKKVGYAVRRDPTDDDIAVLETLW 240
++ ++EE++W CNG+ GYAVRR+ D VL L
Sbjct: 178 FPTAAAAPSSSSSSSSSSSAGGRKLVEETVWRAYCNGRSCGYAVRRECGAADWRVLRALE 237
Query: 241 AVSMGGGVLPGISDMDGKDGEMAYMRGSFEHIIGSRNSESLYMISPHGGDC--------- 291
VSMG GV+P + G +G++ YMR FE ++GSR+SE+ YM++P DC
Sbjct: 238 PVSMGAGVIP--AACGGGEGDVMYMRARFERVVGSRDSEAFYMMNP---DCGGSGSNNNG 292
Query: 292 -PELAVFFVRL 301
PEL+V+ +R+
Sbjct: 293 GPELSVYLLRV 303
>Os05g0280150
Length = 412
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 92/178 (51%), Gaps = 10/178 (5%)
Query: 128 LFGYRDARIALSLQDNPRCQPTLVVELALPTHALLRDLGTTAGARIVLESEKRXXXXXXX 187
+FG R + +Q + P + EL++P +L ++G+ RI LE
Sbjct: 87 IFGRRSGHVTFCVQRDAAMPPPFLFELSVPMLSLAAEMGSGL-LRIALECHHSSGKVVVG 145
Query: 188 XXXXXSSRREREQQDGWVLEESMWTMSCNGKKVGYAVRRDPTDDDIAVLETLWAVSMGGG 247
+ G S+W SCNG+ VGYAVRR PTD D VLE++ + G G
Sbjct: 146 AADGDTINNAGTGGGG---SRSVWKASCNGRDVGYAVRRRPTDQDCRVLESMRMTTTGVG 202
Query: 248 VLP--GISDMDGKDGEMAYMRGSFEHIIGSRNSESLYMISP---HGGDCPELAVFFVR 300
VLP G S+ DG G++ YMR ++E ++GS+++ S ++I+P G EL+VF +R
Sbjct: 203 VLPSTGFSE-DGGGGDVLYMRATYERVVGSKDAVSYHLITPGTASGSPQQELSVFLLR 259
>Os02g0709600 Protein of unknown function DUF617, plant family protein
Length = 247
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 84/149 (56%), Gaps = 17/149 (11%)
Query: 155 ALPTHALLRDLGTTAGARIVLESEKRXXXXXXXXXXXXSSRREREQQDGWVLEESMWTMS 214
A T AL+R++ ++ R+ LE EK+ RR +LEE W
Sbjct: 114 AYSTGALVREM-SSGLVRLALECEKQPINPG-------EKRRA-------LLEEPTWRAY 158
Query: 215 CNGKKVGYAVRRDPTDDDIAVLETLWAVSMGGGVLP--GISDMDGKDGEMAYMRGSFEHI 272
CNG+K G+AVRR+ D+ VL + VS+G GVLP + ++G++ YMR FE +
Sbjct: 159 CNGRKCGFAVRRECGADEWRVLGAVEPVSVGAGVLPDDAAAAAAAEEGDLMYMRARFERV 218
Query: 273 IGSRNSESLYMISPHGGDCPELAVFFVRL 301
+GSR+SE+ YM++P G PEL+++ +R+
Sbjct: 219 VGSRDSEAFYMMNPDGSGGPELSIYLLRV 247
>Os03g0733266
Length = 231
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 67/114 (58%), Gaps = 16/114 (14%)
Query: 195 RREREQQDGWVLEESMWTMSCNGKKVGYAVRR-DPTDDDIAVLETLWAVSMGGGVLPGIS 253
+R+ G +LE + W + CNG++VG+A RR + +D + VLE LWAV+ G G LPG +
Sbjct: 127 QRQWNNGGGALLESAKWLVYCNGRRVGFAARRGEASDAEGWVLEKLWAVTAGAGRLPGGA 186
Query: 254 DMDGKDGEMAYMRGSFEHIIGSRNSESLYMISP------HGGDCPELAVFFVRL 301
++ YMRG FE + S ++ES +++ P +G D L++FF R+
Sbjct: 187 GVE-------YMRGRFERTVASSDAESFHLVDPIGWLGFNGND--GLSIFFHRI 231
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,485,166
Number of extensions: 285106
Number of successful extensions: 569
Number of sequences better than 1.0e-10: 11
Number of HSP's gapped: 547
Number of HSP's successfully gapped: 11
Length of query: 301
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 201
Effective length of database: 11,814,401
Effective search space: 2374694601
Effective search space used: 2374694601
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)