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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0171800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF617, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.02 (0.0478) R2 : 0.455
β1 : 1.47 (0.173) R2dD : 0.108 R2D : -0.0668
β2 : 1.46 (0.106) R2dC : 0.233 R2C : 0.163
β3 : 3.65 (0.29) R2dE : 0.333 R2E : -0.211
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 14.3 (1.18) R2dD*E : 0.313 R2D*E : -0.0147
γ1 : 0.343 (0.0937) R2dN8 : 0.0224 R2N8 : -0.00947
σ : 0.804
deviance : 298.07
__
_____
C
peak time of C : 14.4
E
wheather : wind
threshold : 5.2
memory length : 1376
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
294.73 0.807 4.03 1.44 1.47 3.65 0.975 14.6 0.332 14.4 5.2 1375 -- --
387.42 0.917 3.87 0.914 1.6 2.33 0.346 -- 0.287 14.5 3.559 1395 -- --
298.07 0.804 4.02 1.47 1.46 3.65 -- 14.3 0.343 14.4 5.2 1376 -- --
381.71 0.91 3.8 1.05 1.46 1.96 -- -- 0.43 14.5 3.3 1400 -- --
411.62 0.945 4.03 1.32 -- 3.58 -- 14.9 0.283 -- 5.2 1614 -- --
422.5 0.964 3.78 0.573 1.32 -- 0.465 -- 0.511 14.7 -- -- -- --
423.26 0.963 3.78 0.584 1.32 -- -- -- 0.513 14.7 -- -- -- --
466.18 1.01 3.78 0.828 -- 0.831 -- -- 0.491 -- 3.3 1400 -- --
405.79 0.938 3.83 -- 1.44 1.51 -- -- 0.292 14.5 2.9 1299 -- --
525.51 1.07 3.79 0.528 -- -- -- -- 0.48 -- -- -- -- --
432.25 0.973 3.79 -- 1.31 -- -- -- 0.448 14.6 -- -- -- --
476.07 1.02 3.8 -- -- 0.779 -- -- 0.415 -- 2.9 1299 -- --
532.86 1.08 3.8 -- -- -- -- -- 0.421 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 284.89 temperature 20 720 < th dose independent rect. 18 1
2 285.99 humidity 90 1440 < th dose dependent rect. 3 1
3 286.33 humidity 90 1440 < th dose dependent rect. 2 5
13 290.02 temperature 20 720 < th dose independent rect. 11 9
16 290.19 temperature 20 1440 > th dose independent rect. 18 1
19 290.87 wind 7 1440 < th dose independent rect. 8 1
23 292.79 humidity 80 1440 < th dose independent rect. 22 2
27 293.78 wind 7 1440 > th dose independent rect. 8 1
29 294.17 wind 5 1440 > th dose independent rect. 17 23
30 294.29 wind 5 4320 > th dose dependent rect. 19 4
36 295.09 humidity 80 270 < th dose dependent rect. 21 10
40 295.54 humidity 80 10 < th dose independent rect. 20 11
42 295.83 wind 5 1440 < th dose independent rect. 17 23
43 295.86 wind 5 1440 > th dose independent rect. 7 18
47 296.11 wind 5 1440 > th dose independent rect. 15 23
54 296.44 wind 5 1440 < th dose independent rect. 7 18
64 296.95 humidity 80 1440 < th dose dependent rect. 21 11
65 297.01 humidity 80 270 < th dose independent rect. 21 9
66 297.10 humidity 80 720 < th dose dependent rect. 21 3
85 297.74 wind 5 4320 > th dose independent rect. 20 2
97 298.14 wind 5 1440 < th dose independent rect. 15 23
105 298.29 humidity 90 1440 < th dose dependent rect. 5 2
111 298.43 humidity 80 1440 < th dose dependent rect. 22 1
141 299.12 humidity 70 1440 > th dose dependent rect. 1 6
146 299.20 wind 5 1440 > th dose independent rect. 24 23
148 299.27 wind 5 1440 > th dose dependent rect. 8 1
153 299.35 wind 5 1440 > th dose independent no NA NA
157 299.45 wind 5 1440 < th dose independent rect. 7 8
172 299.95 wind 5 1440 > th dose independent rect. 7 8
178 300.09 wind 5 1440 > th dose independent rect. 11 23
198 300.55 wind 5 1440 < th dose independent rect. 24 23
200 300.57 wind 5 1440 > th dose independent rect. 22 23
208 300.72 wind 5 1440 < th dose independent no NA NA
232 301.52 wind 5 1440 < th dose independent rect. 11 23
237 301.64 wind 5 1440 < th dose independent rect. 22 23
266 302.55 wind 5 4320 < th dose independent rect. 20 2
271 302.67 wind 5 1440 > th dose independent sin 3 NA
298 303.38 wind 7 1440 < th dose independent rect. 5 4
317 303.90 wind 5 1440 < th dose independent sin 3 NA
319 303.94 humidity 80 10 < th dose dependent rect. 20 11
338 304.37 wind 7 4320 < th dose independent rect. 18 4
339 304.48 humidity 50 1440 > th dose dependent rect. 5 2
349 304.72 wind 7 4320 < th dose independent rect. 18 7
356 304.87 wind 5 1440 > th dose independent rect. 12 1
397 305.68 wind 5 720 > th dose dependent rect. 19 2
404 305.79 humidity 80 1440 < th dose independent rect. 22 10
448 306.69 wind 5 720 > th dose dependent rect. 19 4
479 307.37 humidity 80 1440 > th dose independent rect. 22 10
514 308.23 wind 5 1440 > th dose independent rect. 1 14
523 308.52 temperature 20 720 > th dose independent rect. 13 8
524 308.55 wind 5 1440 < th dose independent rect. 12 1
536 308.87 wind 7 4320 > th dose independent rect. 18 4
549 309.27 humidity 70 1440 > th dose dependent rect. 1 3
579 309.75 humidity 80 1440 > th dose independent rect. 22 4
584 309.82 wind 5 1440 < th dose independent rect. 1 14
601 310.20 humidity 80 1440 > th dose independent rect. 6 1
602 310.20 wind 7 4320 > th dose independent rect. 18 7
651 311.25 wind 5 1440 > th dose independent rect. 11 3
738 312.73 wind 3 1440 > th dose dependent rect. 7 18
747 312.90 wind 5 1440 < th dose independent rect. 11 3
842 314.45 wind 3 1440 > th dose dependent rect. 17 23
930 316.02 wind 3 1440 > th dose dependent rect. 22 23
935 316.07 atmosphere 995 14400 < th dose independent rect. 18 1
938 316.07 atmosphere 995 14400 < th dose dependent rect. 18 1
947 316.19 atmosphere 995 14400 > th dose independent rect. 16 3
959 316.29 wind 5 720 > th dose independent rect. 19 4
963 316.32 wind 3 1440 > th dose dependent rect. 15 23
971 316.40 atmosphere 995 14400 < th dose independent rect. 16 3
975 316.43 atmosphere 995 14400 < th dose independent rect. 16 1
983 316.47 wind 5 1440 > th dose dependent rect. 15 19