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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0577100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF617, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.89 (0.0373) R2 : 0.507
β1 : -1.68 (0.138) R2dD : 0.182 R2D : 0.0443
β2 : 1.3 (0.0902) R2dC : 0.219 R2C : 0.158
β3 : 1.79 (0.137) R2dE : 0.192 R2E : 0.0223
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.715 (0.081) R2dN8 : 0.122 R2N8 : -0.002
σ : 0.693
deviance : 221.31
__
_____
C
peak time of C : 21.9
E
wheather : temperature
threshold : 23.21
memory length : 113
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
217.55 0.693 4.88 -1.46 1.47 1.76 0.984 1.7 -0.72 21.7 20.6 29 -- --
220.59 0.697 4.91 -1.74 1.51 1.82 0.682 -- -0.793 21.7 21.23 60 -- --
220.71 0.692 4.88 -1.47 1.45 1.72 -- 1.55 -0.694 21.7 21.67 34 -- --
221.31 0.693 4.89 -1.68 1.3 1.79 -- -- -0.715 21.9 23.21 113 -- --
251.8 0.739 4.82 -1.71 -- 2.08 -- 0.778 -0.622 -- 24.6 625 -- --
271.18 0.772 4.85 -1.37 1.44 -- 0.964 -- -0.491 19.9 -- -- -- --
273.88 0.775 4.85 -1.39 1.44 -- -- -- -0.49 19.9 -- -- -- --
252.43 0.74 4.85 -1.83 -- 2.17 -- -- -0.698 -- 24.6 629 -- --
292.72 0.797 4.82 -- 1.28 1.4 -- -- -0.405 21.3 25.4 113 -- --
386.73 0.919 4.81 -1.41 -- -- -- -- -0.509 -- -- -- -- --
324.95 0.843 4.81 -- 1.45 -- -- -- -0.335 19.8 -- -- -- --
336.92 0.855 4.8 -- -- 1.86 -- -- -0.448 -- 25 589 -- --
439 0.978 4.77 -- -- -- -- -- -0.353 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 207.29 atmosphere 1e+03 43200 < th dose independent rect. 4 2
3 207.31 atmosphere 1e+03 43200 > th dose independent rect. 5 1
5 207.38 atmosphere 1e+03 43200 > th dose independent rect. 4 3
18 208.41 wind 9e+00 43200 > th dose dependent rect. 16 14
19 208.42 wind 9e+00 43200 > th dose dependent rect. 20 2
20 208.44 atmosphere 1e+03 43200 > th dose independent rect. 7 1
35 208.61 atmosphere 1e+03 43200 < th dose independent rect. 4 9
52 208.81 atmosphere 1e+03 43200 < th dose dependent rect. 16 1
70 208.91 atmosphere 1e+03 43200 < th dose independent rect. 21 18
75 208.93 atmosphere 1e+03 43200 < th dose independent rect. 22 15
82 208.95 atmosphere 1e+03 43200 < th dose independent rect. 18 21
84 208.96 atmosphere 1e+03 43200 < th dose independent rect. 18 19
85 208.97 atmosphere 1e+03 43200 < th dose independent sin 5 NA
88 208.97 atmosphere 1e+03 43200 > th dose independent rect. 21 18
95 208.99 atmosphere 1e+03 43200 > th dose independent rect. 22 15
98 208.99 atmosphere 1e+03 43200 < th dose dependent rect. 15 4
103 209.02 atmosphere 1e+03 43200 > th dose independent sin 5 NA
119 209.05 atmosphere 1e+03 43200 < th dose dependent rect. 14 6
208 209.29 atmosphere 1e+03 43200 < th dose independent rect. 4 20
219 209.32 atmosphere 1e+03 43200 < th dose dependent rect. 11 11
226 209.34 wind 9e+00 43200 > th dose independent rect. 17 14
263 209.43 atmosphere 1e+03 43200 < th dose dependent sin 20 NA
333 209.56 atmosphere 1e+03 43200 < th dose dependent rect. 5 18
353 209.60 wind 9e+00 43200 > th dose independent rect. 20 2
389 209.66 atmosphere 1e+03 43200 < th dose independent rect. 18 6
395 209.67 atmosphere 1e+03 43200 > th dose independent rect. 4 20
405 209.69 wind 9e+00 43200 < th dose independent rect. 17 13
413 209.70 atmosphere 1e+03 43200 < th dose independent rect. 12 1
421 209.72 atmosphere 1e+03 43200 < th dose independent no NA NA
434 209.73 atmosphere 1e+03 43200 < th dose independent rect. 14 23
456 209.77 atmosphere 1e+03 43200 < th dose independent rect. 11 4
466 209.79 atmosphere 1e+03 43200 > th dose independent rect. 11 2
469 209.79 atmosphere 1e+03 43200 < th dose independent rect. 9 23
571 209.91 atmosphere 1e+03 43200 > th dose independent rect. 9 1
676 210.05 atmosphere 1e+03 43200 > th dose independent no NA NA
696 210.07 atmosphere 1e+03 43200 > th dose independent rect. 14 23
704 210.09 atmosphere 1e+03 43200 < th dose independent rect. 18 1
715 210.11 atmosphere 1e+03 43200 > th dose independent rect. 22 1
723 210.12 atmosphere 1e+03 43200 < th dose independent rect. 23 1
726 210.12 wind 9e+00 43200 > th dose independent rect. 20 10
730 210.12 atmosphere 1e+03 43200 > th dose independent rect. 11 23
740 210.13 atmosphere 1e+03 43200 > th dose independent rect. 9 23
779 210.18 atmosphere 1e+03 43200 > th dose independent rect. 7 23
875 210.34 wind 9e+00 43200 < th dose independent rect. 20 9
893 210.37 atmosphere 1e+03 43200 > th dose independent rect. 14 1
906 210.38 precipitation 1e-01 43200 > th dose dependent rect. 20 1
941 210.44 atmosphere 1e+03 43200 > th dose independent rect. 18 6
968 210.47 atmosphere 1e+03 43200 < th dose dependent rect. 7 1