BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0577100 Os05g0577100|Os05g0577100
(297 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G25640.1 | chr3:9333775-9334578 FORWARD LENGTH=268 190 6e-49
AT5G23100.1 | chr5:7753557-7754390 FORWARD LENGTH=278 179 1e-45
AT2G41660.1 | chr2:17367945-17368838 FORWARD LENGTH=298 157 5e-39
AT4G39610.1 | chr4:18393808-18394602 REVERSE LENGTH=265 134 5e-32
AT5G06990.1 | chr5:2169699-2170484 FORWARD LENGTH=262 132 3e-31
AT2G21990.1 | chr2:9359573-9360331 REVERSE LENGTH=253 127 8e-30
AT5G42680.1 | chr5:17114640-17115356 FORWARD LENGTH=239 119 2e-27
AT2G37880.1 | chr2:15860705-15861448 FORWARD LENGTH=248 111 4e-25
AT1G76610.1 | chr1:28751049-28751729 FORWARD LENGTH=227 106 2e-23
AT1G21050.1 | chr1:7366859-7367596 FORWARD LENGTH=246 100 1e-21
AT5G65340.1 | chr5:26113684-26114445 REVERSE LENGTH=254 96 3e-20
AT2G22460.1 | chr2:9533354-9534091 REVERSE LENGTH=246 77 2e-14
>AT3G25640.1 | chr3:9333775-9334578 FORWARD LENGTH=268
Length = 267
Score = 190 bits (483), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 101/192 (52%), Positives = 119/192 (61%), Gaps = 27/192 (14%)
Query: 116 GLGARLTGTLYGHRRGHVHLAFQLDXXXXXXXXXXXXXXXXXXVREMASGLVRIALECER 175
GLG R+ GTL+G+RRGHV+ A Q D VREMASGLVRIALE
Sbjct: 93 GLGFRVVGTLFGNRRGHVYFAVQDDPTRLPAVLIQLPTPTSVLVREMASGLVRIALETAA 152
Query: 176 AKGGPAPALPTATGGGKRLLEETVWRAYCNGKSCGYAVRRECGAADWRVLRALEPVSMGA 235
K T K+LLEE+ WR YCNGK CGYA R+ECG A+W+VL+A+ P++MGA
Sbjct: 153 YK----------TDSKKKLLEESTWRTYCNGKKCGYAARKECGEAEWKVLKAVGPITMGA 202
Query: 236 GVIPAAS----------CGGGEGDVMYMRARFERVVGSRDSEAFYMMNPDXXXXXXXXXX 285
GV+PA + G +G++MYMRARFERVVGSRDSEAFYMMNPD
Sbjct: 203 GVLPATTTTVDEEGNGAVGSEKGELMYMRARFERVVGSRDSEAFYMMNPD-------VSS 255
Query: 286 XXPELSVYLLRV 297
PELSVY LRV
Sbjct: 256 GGPELSVYFLRV 267
>AT5G23100.1 | chr5:7753557-7754390 FORWARD LENGTH=278
Length = 277
Score = 179 bits (455), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 102/205 (49%), Positives = 123/205 (60%), Gaps = 27/205 (13%)
Query: 112 HRQVGLGARLTGTLYGHRRGHVHLAFQLDXXXXXXXXXXXXXXXXXXVREMASGLVRIAL 171
++ GLG+R+ GTL+G RRGHVH + Q D V+EMASGLVRIAL
Sbjct: 81 NQNSGLGSRVVGTLFGSRRGHVHFSIQKDPNSPPAFLIELATPISGLVKEMASGLVRIAL 140
Query: 172 ECE---------------RAKGGPAPALPTATGGGKRLLEETVWRAYCNGKSCGYAVRRE 216
EC+ R GG T +RL+EE +WR YCNGK CG+A RRE
Sbjct: 141 ECDKGKEEEEGEEKNGTLRHGGGDKTKTTTTAAVSRRLVEEPMWRTYCNGKKCGFATRRE 200
Query: 217 CGAADWRVLRALEPVSMGAGVIPAAS----CGGGEGDVMYMRARFERVVGSRDSEAFYMM 272
CG + +VL+ALE VSMGAGV+P GGG GD+MYMRA+FER+VGSRDSEAFYMM
Sbjct: 201 CGEKEKKVLKALEMVSMGAGVLPETEEIGGGGGGGGDIMYMRAKFERIVGSRDSEAFYMM 260
Query: 273 NPDXXXXXXXXXXXXPELSVYLLRV 297
NPD PELS+YLLR+
Sbjct: 261 NPD--------SNGAPELSIYLLRI 277
>AT2G41660.1 | chr2:17367945-17368838 FORWARD LENGTH=298
Length = 297
Score = 157 bits (398), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 88/192 (45%), Positives = 109/192 (56%), Gaps = 30/192 (15%)
Query: 117 LGARLTGTLYGHRRGHVHLAFQLDXXXXXXXXXXXXXXXXXXVREMASGLVRIALECERA 176
LG R+TGTLYGH+RGHV + Q + V+EM+SGLVRIALECE+
Sbjct: 125 LGRRVTGTLYGHKRGHVTFSVQYNQRSDPVLLLDLAMSTATLVKEMSSGLVRIALECEKR 184
Query: 177 KGGPAPALPTATGGGKRLLEETVWRAYCNGKSCGYAVRR--ECGAADWRVLRALEPVSMG 234
G +L +E W YCNG+ CGYAV R C DWRVL + V++G
Sbjct: 185 HRS-----------GTKLFQEPKWTMYCNGRKCGYAVSRGGACTDTDWRVLNTVSRVTVG 233
Query: 235 AGVIP-------AASCGGGE--GDVMYMRARFERVVGSRDSEAFYMMNPDXXXXXXXXXX 285
AGVIP + G G G+++YMR +FERVVGSRDSEAFYMMNPD
Sbjct: 234 AGVIPTPKTIDDVSGVGSGTELGELLYMRGKFERVVGSRDSEAFYMMNPD--------KN 285
Query: 286 XXPELSVYLLRV 297
PELS++LLR+
Sbjct: 286 GGPELSIFLLRI 297
>AT4G39610.1 | chr4:18393808-18394602 REVERSE LENGTH=265
Length = 264
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/180 (40%), Positives = 102/180 (56%), Gaps = 11/180 (6%)
Query: 119 ARLTGTLYGHRRGHVHLAFQLDXXXXXXXXXXXXXXXXXXVREMASGLVRIALECERAKG 178
+R+TGTL+G+R+G V L+ Q + +E+++G+VRIALE E+
Sbjct: 95 SRITGTLFGYRKGRVSLSIQENPKCLPSLVVELAMQTTTLQKELSTGMVRIALETEKQPR 154
Query: 179 GPAPALPTATGGGKRLLEETVWRAYCNGKSCGYAVRRECGAADWRVLRALEPVSMGAGVI 238
A + T +LEE +W YC G+ GY V+RE D V+ L PVSMGAGV+
Sbjct: 155 --ADNNNSKTEKKTDILEEPLWTMYCKGEKTGYGVKREATEEDLNVMELLRPVSMGAGVL 212
Query: 239 PAAS-CGGGEGDVMYMRARFERVVGSRDSEAFYMMNPDXXXXXXXXXXXXPELSVYLLRV 297
P S G +G++ YMRA FERV+GS+DSE FYM++P+ PELS + +RV
Sbjct: 213 PGNSESEGPDGEMAYMRAYFERVIGSKDSETFYMLSPE--------GNNGPELSFFFVRV 264
>AT5G06990.1 | chr5:2169699-2170484 FORWARD LENGTH=262
Length = 261
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 106/191 (55%), Gaps = 30/191 (15%)
Query: 118 GARLTGTLYGHRRGHVHLAFQLDXXXXXXXXXXXXXXXXXXVREMASGLVRIALECERAK 177
G R+TGTL+G+R+ V+LA Q + ++++ GLVRIALECE+
Sbjct: 90 GTRVTGTLFGYRKTRVNLAVQENPRSLPILLLELAIPTGKLLQDLGVGLVRIALECEKK- 148
Query: 178 GGPAPALPTATGGGKRLLEETVWRAYCNGKSCGYAVRRECGAADWRVLRALEPVSMGAGV 237
P+ T ++++E +W YCNGK GY V+R+ D V++ L VSMGAGV
Sbjct: 149 ----PSEKT------KIIDEPIWALYCNGKKSGYGVKRQPTEEDLVVMQMLHAVSMGAGV 198
Query: 238 IPAAS-----------CGGGEGDVMYMRARFERVVGSRDSEAFYMMNPDXXXXXXXXXXX 286
+P +S G EGD+ YMRA FERV+GSRDSE +YMMNPD
Sbjct: 199 LPVSSGAITEQSGGGGGGQQEGDLTYMRAHFERVIGSRDSETYYMMNPD--------GNS 250
Query: 287 XPELSVYLLRV 297
PELS++ +RV
Sbjct: 251 GPELSIFFVRV 261
>AT2G21990.1 | chr2:9359573-9360331 REVERSE LENGTH=253
Length = 252
Score = 127 bits (319), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 104/188 (55%), Gaps = 19/188 (10%)
Query: 111 RHRQVGLGARLTGTLYGHRRGHVHLAFQLDXXXXXXXXXXXXXXXXXXVREMASGLVRIA 170
+HR G+R+TGTL+G+R+G V L+ Q +E++ G+VRIA
Sbjct: 83 QHRSGSSGSRVTGTLFGYRKGRVSLSIQESPRCLPSLVVELAMQTMVLQKELSGGMVRIA 142
Query: 171 LECERAKGGPAPALPTATGGGKRLLEETVWRAYCNGKSCGYAVRRECGAADWRVLRALEP 230
LE E K G + ++++E +W + NGK GY V+R+ D V+ L P
Sbjct: 143 LETE--KRGDKEKI--------KIMDEPLWTMFSNGKKTGYGVKRDATEEDLNVMELLRP 192
Query: 231 VSMGAGVIPAAS-CGGGEGDVMYMRARFERVVGSRDSEAFYMMNPDXXXXXXXXXXXXPE 289
VSMGAGV+P + G + ++ YMRA FERVVGS+DSE FYM++P+ PE
Sbjct: 193 VSMGAGVLPGNTEFEGPDSEMAYMRAYFERVVGSKDSETFYMLSPE--------GNNGPE 244
Query: 290 LSVYLLRV 297
LS++ +RV
Sbjct: 245 LSIFFVRV 252
>AT5G42680.1 | chr5:17114640-17115356 FORWARD LENGTH=239
Length = 238
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 95/178 (53%), Gaps = 22/178 (12%)
Query: 122 TGTLYGHRRGHVHLAFQLDXXXXXXXXXXXXXXXXXXVREMASGLVRIALECERAKGGPA 181
TGT++G R+G V LA Q D +EMAS VRIALE E
Sbjct: 78 TGTIFGFRKGRVFLAIQEDPHCLPIFIIELPMLTSALQKEMASETVRIALESE------- 130
Query: 182 PALPTATGGGKRLLEETVWRAYCNGKSCGYAVRRE-CGAADWRVLRALEPVSMGAGVIPA 240
K++LEE VW YCNG+ GY++RR+ + V+ AL VSMGAGV+P
Sbjct: 131 -----TKTSRKKVLEEYVWGIYCNGRKIGYSIRRKNMSEEEMYVIDALRGVSMGAGVLPC 185
Query: 241 ASC--GGGEGDVMYMRARFERVVGSRDSEAFYMMNPDXXXXXXXXXXXXPELSVYLLR 296
+ EG++ YMRARF+RV+GS+DSEA YM+NP+ ELS+Y LR
Sbjct: 186 KNQYDQETEGEMTYMRARFDRVIGSKDSEALYMINPEGSGQGT-------ELSIYFLR 236
>AT2G37880.1 | chr2:15860705-15861448 FORWARD LENGTH=248
Length = 247
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 94/183 (51%), Gaps = 26/183 (14%)
Query: 121 LTGTLYGHRRGHVHLAFQLDXXXXX-XXXXXXXXXXXXXVREMASGLVRIALECERAKGG 179
+ GT++G R+GHV Q D V EM SGLVR+ALEC
Sbjct: 81 VIGTIFGRRKGHVWFCVQHDRLSVKPILLLELSIATSQLVHEMGSGLVRVALEC------ 134
Query: 180 PAPALPTATGGGKRLLEET-VWRAYCNGKSCGYAVRRECGAADWRVLRALEPVSMGAGVI 238
PT LL VW +CNG+ G+AVRR +L+ LE +++GAGV+
Sbjct: 135 -----PTRPELKSCLLRSVPVWTMFCNGRKLGFAVRRSANEETRMMLKRLESMTVGAGVL 189
Query: 239 PAASCGGG--EGD---VMYMRARFERVVGSRDSEAFYMMNPDXXXXXXXXXXXXPELSVY 293
P+ S GG E D VMYMRA +E VVGS DSE+F+++NPD ELS++
Sbjct: 190 PSGSGLGGSDESDTDEVMYMRANYEHVVGSSDSESFHLINPDANSAQ--------ELSIF 241
Query: 294 LLR 296
LLR
Sbjct: 242 LLR 244
>AT1G76610.1 | chr1:28751049-28751729 FORWARD LENGTH=227
Length = 226
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 79/158 (50%), Gaps = 22/158 (13%)
Query: 118 GARLTGTLYGHRRGHVHLAFQLDXXXXXXXXXXXXXX--XXXXVREMASGLVRIALECER 175
G +TGT YGHRRGHV Q D REM G +RIAL +
Sbjct: 73 GVVVTGTFYGHRRGHVSFCLQDDTRPSSPPLLLLELAVPTAALAREMEEGFLRIALRSKS 132
Query: 176 AKGGPAPALPTATGGGKRLLEETVWRAYCNGKSCGYAVRRECGAADWRVLRALEPVSMGA 235
+ +P VW YCNG+ G+AVRRE D LR ++ VS+GA
Sbjct: 133 NRRSSIFNVP-------------VWSMYCNGRKFGFAVRRETTENDVGFLRLMQSVSVGA 179
Query: 236 GVIPAASCGGGEGDVMYMRARFERVVGSRDSEAFYMMN 273
GVIP G+ +Y+RA+FERV GS DSE+F+M+N
Sbjct: 180 GVIP-------NGETLYLRAKFERVTGSSDSESFHMVN 210
>AT1G21050.1 | chr1:7366859-7367596 FORWARD LENGTH=246
Length = 245
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/176 (36%), Positives = 91/176 (51%), Gaps = 22/176 (12%)
Query: 123 GTLYGHRRGHVHLAFQLDXXXXXXXXXXXXXXXXXXV-REM-ASGLVRIALECERAKGGP 180
GT +GHRRG V Q + +EM G++RIALEC+R +
Sbjct: 89 GTFFGHRRGRVSFCLQDAAVGSSPLLLLELAVPTAALAKEMDEEGVLRIALECDRRR--- 145
Query: 181 APALPTATGGGKRLLEETVWRAYCNGKSCGYAVRRECGAADWRVLRALEPVSMGAGVIPA 240
++ + + VW +CNG+ G+AVRR+ D LR ++ VS+GAGV+P+
Sbjct: 146 -----SSNSRSSSIFDVPVWSMFCNGRKMGFAVRRKVTENDAVFLRMMQSVSVGAGVVPS 200
Query: 241 ASCGGGEGDVMYMRARFERVVGSRDSEAFYMMNPDXXXXXXXXXXXXPELSVYLLR 296
E ++Y+RARFERV GS DSE+F+MMNP ELS++LLR
Sbjct: 201 EE----EDQMLYLRARFERVTGSSDSESFHMMNP--------GGSYGQELSIFLLR 244
>AT5G65340.1 | chr5:26113684-26114445 REVERSE LENGTH=254
Length = 253
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 78/158 (49%), Gaps = 9/158 (5%)
Query: 121 LTGTLYGHRRGHVHLAFQLDXXXXXX---XXXXXXXXXXXXVREMASGLVRIALECERAK 177
TGT++G RRG V+ Q REM G++RIALE
Sbjct: 83 FTGTIFGFRRGKVNFCIQATNSKTLNPIIVLLELTVPTEVLAREMQGGVLRIALESNNND 142
Query: 178 GGPAPALPTATGGGKRLLEETVWRAYCNGKSCGYAVRRECGAADWRVLRALEPVSMGAGV 237
G + LL +W YCNG+ G+A++RE ++ L+ L PV+ GAGV
Sbjct: 143 G-----YDSHEDSSSSLLTTPLWNMYCNGRKVGFAIKREPSKSELAALKVLTPVAEGAGV 197
Query: 238 IPAASCGGGEGD-VMYMRARFERVVGSRDSEAFYMMNP 274
+ + D +MY+RA F+RV GS DSE+F++++P
Sbjct: 198 VNGEEINREKSDHMMYLRASFKRVFGSFDSESFHLVDP 235
>AT2G22460.1 | chr2:9533354-9534091 REVERSE LENGTH=246
Length = 245
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 12/155 (7%)
Query: 121 LTGTLYGHRRGHVHLAFQLDXXXXXXXXXXXXXXXXXXV-REMASGLVRIALECERAKGG 179
+TGT++G+R+G ++ Q + REM G +RI LE K
Sbjct: 85 VTGTIFGYRKGKINFCIQTPRKSTNLDLLLELAVPTTVLAREMREGALRIVLERNNEKQD 144
Query: 180 PAPALPTATGGGKRLLEETVWRAYCNGKSCGYAVRRECGAADWRVLRALEPVSMGAGVIP 239
L + W YCNGK GYA +R D L AL V +GAGV+
Sbjct: 145 -----------DDSFLSKPFWNMYCNGKRVGYARKRSPSQDDMTALTALSKVVVGAGVVT 193
Query: 240 AASCGGGEGDVMYMRARFERVVGSRDSEAFYMMNP 274
G + ++MY+RA F RV GS++SE+F++++P
Sbjct: 194 GKELGRFDDELMYLRASFRRVNGSKESESFHLIDP 228
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,700,926
Number of extensions: 152057
Number of successful extensions: 292
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 12
Length of query: 297
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 199
Effective length of database: 8,419,801
Effective search space: 1675540399
Effective search space used: 1675540399
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 111 (47.4 bits)